Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02567 ATGGTAAATGTAGGCAACGGTAACACTAGATATTTGAATATCTTATTGCCACTTTCTACACTGTCCGAAAGCAAGTTCAGTTCAGTTCATTACACTGCGCCTTCAATTCCTCTTCTTTTCGTTAGTGAGATGGCAAAGGGTTGCTCCAACAACACTTACGAAGAGGCTAGAAAACAAAGACTTGAAGAAAACAAAAAGAGGTTTGAGGATTTGGGGATTTCAAGGATTTCAAAAAATTTGACTGAAATCACAAGTTCTGCAAAGAAGACGCTGCATCATCTTCCTAAACTGAAATCAAAGAAGACAAATGTTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGAAACCCAGTTCCTTCATACCGTGAAGCTGAGAGCATAGACCTTCCACCTTTGCGGAAGAGGTCGAGGTCAAATTCTTCAACATGGGGAAGTTATGTTGCGAGGCCACTAGATGAAATCAAAGAAGCAACAGAAGAGGAAAGACTTTGTGCTCTGGAGGCTGCAGAGGCACTCCAAATCAATTTGAACTCTTCAAATCCATCATTTATCAAGTCAATGGTTCGGTCTCACGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATCTTCCAAAAACTGTATATGATATGGTTTTAGAAGATGAAAATGGTTCAGAATATGAGGCTGTTTACATTGGCAACAGATCTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGTGATGCCCTTGTTTTTGAATTGATTGAAGCTTCAAGATTTAAGATTTATATTGTTAGAGCATTTCCAGATTCTGTTGAAGAAAAGGGAAAGGATATTTTAGAGGAAGAAGGAAATATGAGTGCAACCAAAGCACCAAAATCTGCCTGTAATCTTGAATCAGAATCCAAGACAAAAAAGCCAAAACAGGCTGCAGTTTATGAAACTAAGGAATCAGAGAGTTCTCAGGAGCATTTGCCAGATAGTAGCATTGACAACAAAGTCAAACCACAGGGGGTAAACCCAACTAACAAAACTAAATTTTCTCAGAAAAAAGCGCAAAAGAAATCTAAATTTCCTGCTACTGCTGAGTCAAAAGGGAAAGTGCATATTAAAACTGAGAAACCAAAGGCGTCAGTTATGCTGTCAAACAAGACAAGGAAGTCAAAAGAAGGTATTATAAATGAAATTGGTGACTCAGGCAAATTAGAAAAGAATGGGTTTGTTCAGGATGCTGACAGCAAGTTAGAGAAAGTTGAACTAGTTAAAGAAGCAAGCAAATGTGTGTCACAAAAGGCTAGAAAAAATCCAGCTCCAAAGTTTTTCAGAAAGAAAGCATAA 1356 0.3879 MVNVGNGNTRYLNILLPLSTLSESKFSSVHYTAPSIPLLFVSEMAKGCSNNTYEEARKQRLEENKKRFEDLGISRISKNLTEITSSAKKTLHHLPKLKSKKTNVEVEPRRSSRVRNPVPSYREAESIDLPPLRKRSRSNSSTWGSYVARPLDEIKEATEEERLCALEAAEALQINLNSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTVYDMVLEDENGSEYEAVYIGNRSGLSGGWRAFALDHKLDDGDALVFELIEASRFKIYIVRAFPDSVEEKGKDILEEEGNMSATKAPKSACNLESESKTKKPKQAAVYETKESESSQEHLPDSSIDNKVKPQGVNPTNKTKFSQKKAQKKSKFPATAESKGKVHIKTEKPKASVMLSNKTRKSKEGIINEIGDSGKLEKNGFVQDADSKLEKVELVKEASKCVSQKARKNPAPKFFRKKA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02567 451 MobiDBLite consensus disorder prediction 339 353 - -
Pumo9g02567 451 ProSiteProfiles B3 DNA-binding domain profile. 183 274 IPR003340 GO:0003677
Pumo9g02567 451 CDD B3_DNA 181 272 IPR003340 GO:0003677
Pumo9g02567 451 Gene3D - 157 274 IPR015300 -
Pumo9g02567 451 MobiDBLite consensus disorder prediction 95 120 - -
Pumo9g02567 451 MobiDBLite consensus disorder prediction 289 391 - -
Pumo9g02567 451 MobiDBLite consensus disorder prediction 362 380 - -
Pumo9g02567 451 SMART B3_2 183 274 IPR003340 GO:0003677
Pumo9g02567 451 MobiDBLite consensus disorder prediction 98 112 - -
Pumo9g02567 451 Pfam B3 DNA binding domain 183 271 IPR003340 GO:0003677
Pumo9g02567 451 SUPERFAMILY DNA-binding pseudobarrel domain 178 272 IPR015300 -
Pumo9g02567 451 MobiDBLite consensus disorder prediction 305 336 - -
Pumo9g02567 451 Coils Coil 51 71 - -
Pumo9g02567 451 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 88 273 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02567 Pumo-Chr9 61161513 61166996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02567 53 273 B3 DNA Binding Superfamily AT5G58280 51.613 1.56e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo9g02567 B3 7.8e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02567 - - gmx:100786265 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02567 9 61161513 61166996 Pumo9g02567 9 61161513 61166996 ECH