Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03521 ATGTTCTCTTTCCTTGTTTTGTTTTCAGCGATGGAGGACGAGCCATTTCAACAACAACCCATCATCATCGATCGCGCCGATTTGCCCTTCCCATCTTCCAAGTCCTTCAACGACGTCACCACCACCCTCCGCGAACAAGCCCAACGCGCGCCTGACGAGATTGTATCCTCCACCGAACAACAACCGGGGTCCCACCATCCCAAGAAGAAAAAACTCAGCCGCTGCAAGACAGCACCTGCCATGGTCACCATGCGAGACCTCAAACCTAAGACACCCCAAGTCCCCAAACCTCAGTCCAGTTCCATAATCCGACAAGGCATGTGGCTACTCGCCATGTACCTCTCCATAGGAGTCGCCATATACTCCTTCAACAGGGACCGTTTTTCTGGGATTGAAACGCACCCTGTTGTTGACGCCCTTTACTTTTGTATAGTTACCATGTGTACCATAGGTTACGGTGACATAGCGCCCTTGACCCCATTCACCAAAATCTTTGCTTGCGTTTTTGTGTTGGTGGGGTTTGGGTTCATAGACATATTACTCAGTGGGCTTGTTAACTTTGTTTTGGATGTGCAAGAGAACATGATCCTAACGGGCCTCCAAATGGGTGCGAGGGAAGAAGGGTTCTCCGCGAGGAATTACATCGTTGACGTGGCGAAGGGAAGGATGAGGATAAGGTTGAAGGTTGGTTTGGCGCTTGGGGTAGTGGTGCTGTGTATTGGGATTGGGAGTTTGGTGCTGTACTTTGTGGAAGGGTTGGATTGGGTTGATTCTATTTACTTGTCGGTTATGTCTGTCACAACGGTTGGGTATGGGGACAGGGCTTTTAAGACGCTTCCCGGTCGCTTATTTGCGGCTATTTGGTTGCTCTTCTCTACTCTCATGGTCGCAAGGGCTTTCCTCTATTTGGCTGAGGCCAGAATCGATAGAAGGCATCGGAGAATGGCTAAGAAAGTCTTGCATAGGGAAATTACCGTTGAGGACTTGCTTGCTGCTGATATCAACAACACTGGTTTCATCAGCAAGTCAGAGTATGTAATCTTCAAGCTGAAAGAGATGGGTAAAATACAGGAAAAAGATGTGTTGCAAATTTGTGACCAATTCAGGAAGCTTGACCCCTCTAACTGTGGGAAGATAACACTACCTCATCTCTTGGGGGGCAGTTTGTGA 1170 0.4855 MFSFLVLFSAMEDEPFQQQPIIIDRADLPFPSSKSFNDVTTTLREQAQRAPDEIVSSTEQQPGSHHPKKKKLSRCKTAPAMVTMRDLKPKTPQVPKPQSSSIIRQGMWLLAMYLSIGVAIYSFNRDRFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPFTKIFACVFVLVGFGFIDILLSGLVNFVLDVQENMILTGLQMGAREEGFSARNYIVDVAKGRMRIRLKVGLALGVVVLCIGIGSLVLYFVEGLDWVDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRMAKKVLHREITVEDLLAADINNTGFISKSEYVIFKLKEMGKIQEKDVLQICDQFRKLDPSNCGKITLPHLLGGSL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03521 389 ProSitePatterns EF-hand calcium-binding domain. 333 345 IPR018247 -
Pumo5g03521 389 PRINTS Two pore domain K+ channel signature 145 173 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pumo5g03521 389 PRINTS Two pore domain K+ channel signature 267 276 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pumo5g03521 389 MobiDBLite consensus disorder prediction 47 62 - -
Pumo5g03521 389 SUPERFAMILY Voltage-gated potassium channels 220 327 - -
Pumo5g03521 389 SUPERFAMILY Voltage-gated potassium channels 99 188 - -
Pumo5g03521 389 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 136 362 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pumo5g03521 389 FunFam Two-pore potassium channel 3 212 326 - -
Pumo5g03521 389 SUPERFAMILY EF-hand 329 383 IPR011992 -
Pumo5g03521 389 Pfam Ion channel 109 188 IPR013099 -
Pumo5g03521 389 Pfam Ion channel 237 305 IPR013099 -
Pumo5g03521 389 FunFam Two-pore potassium channel 5 91 201 - -
Pumo5g03521 389 Gene3D - 82 203 - -
Pumo5g03521 389 Gene3D - 211 332 - -
Pumo5g03521 389 MobiDBLite consensus disorder prediction 47 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03521 Pumo-Chr5 84422469 84424762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03521 45 389 Ion Channels AT4G01840 66.477 3.15e-164 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03521 K05389 - gmx:100780438 654.825