Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00676 ATGGATCCTACTGAGCAAATTTCTGAAGAATGGAGTTCTCTTAGTGGATTTTGCACAGCTGAGGAAGCTGACTTCATGAGCCAGTTGCTTGGTAACTGCTCACTCCCTGAGAACCTGTGTGGAAATTTCAATTTGGGAATTCCATCTGCAATATGGCCTGGCCATGAATCAACAATAGTGAGCGTGACAGGCATCAATGAGAGTTCATATTTTCCTGCAAATGCTGATAATAGTAATACTAATTATTTATGTTTTTCACAAGGAAGTAGCTTCACTGCTGATAGTAGCAATATATGTCCTACTACAAGTGGTAATAAGTGTGATCCAGTAGCCAACATTGGCTACATGTCCATGGGTTTTTCCTTGGGGGATGCCAAGTTTAGCCCATATAATGTTCAGGGGAGTGACAGCCAACAGATAAATGAAAACACTGATGAAGAGTTAGGTCTAGAGGTTATTGCTGACAAGAATTTGCAGGATCACCAGGAATGTGAAGTACTAGTTTCTGAAGCAGCACAAGAGGATATAAACACGAATCTGGAGAAGTCAGGAAAAAGATCAAGAGGCTCAATGCAGGTGCGAAAGAGCAAGAAAAATGCTAAATCCATGAAGAAACCAAAATCTGATTCTATAAGTAACTCTGAAGAGGGTAGAAGTCCTGATCTTCAGGGTTGCTGCTCAGAGGATGATGACTCCAATGCTTCTCAGGAGCTAAATGGTGGAGGATCTTCAAGTTTGAGCCTGGAGGATTCTACATCTCAGAAGTTAAAGGGGAAAAAGTCAACATCTAATAGAGGTTCTGCTACTGATCCACAGAGTGTATATGCAAGAAGAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAACCTTGTCCCCAATGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTGCAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTCTGGATGTACGCTCCCATTGCTTACAATGGAATGAACATTGGACTTGACCTCAATATTATCCCAACCAAACAACCATAA 1062 0.4105 MDPTEQISEEWSSLSGFCTAEEADFMSQLLGNCSLPENLCGNFNLGIPSAIWPGHESTIVSVTGINESSYFPANADNSNTNYLCFSQGSSFTADSSNICPTTSGNKCDPVANIGYMSMGFSLGDAKFSPYNVQGSDSQQINENTDEELGLEVIADKNLQDHQECEVLVSEAAQEDINTNLEKSGKRSRGSMQVRKSKKNAKSMKKPKSDSISNSEEGRSPDLQGCCSEDDDSNASQELNGGGSSSLSLEDSTSQKLKGKKSTSNRGSATDPQSVYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNIIPTKQP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00676 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 332 IPR036638 GO:0046983
Pumo3g00676 353 MobiDBLite consensus disorder prediction 215 271 - -
Pumo3g00676 353 Gene3D - 270 330 IPR036638 GO:0046983
Pumo3g00676 353 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 135 325 IPR045843 GO:0003700|GO:0006355
Pumo3g00676 353 SMART finulus 273 322 IPR011598 GO:0046983
Pumo3g00676 353 FunFam Basic helix-loop-helix transcription factor 268 325 - -
Pumo3g00676 353 MobiDBLite consensus disorder prediction 177 278 - -
Pumo3g00676 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 316 IPR011598 GO:0046983
Pumo3g00676 353 Pfam Helix-loop-helix DNA-binding domain 277 317 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00676 Pumo-Chr3 10057749 10059465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00676 10 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 37.018 1.54e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g00676 HLH 8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00676 - - gmx:100817334 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00676 3 10057749 10059465 Pumo3g00676 3 10057749 10059465 ECH