Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01925 ATGAGTTTTGGAAGTAGAGGGAAGCTGAAAGACACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACACCAGGAGGGACAAGATACTGGCTCAGTACAGTGCAGATGCTGAGATTATGGCAGAGTTTGAGCAGTCTGGTGTGTCTGGAAAATCATTTGACTACTCAAGGATGGTTGTTGATCCTCCCAGGTTAGTGTCTGAGGCGAAAATGACTGCATATTTGTCCAAAATCCAAAGGGGTGGCCTAATCCAACCCTTTGGATGCATGCTTGCAATTGAGGAAGCCACTTTTAGGATCATTGGGTACAGTGATAATTGTTTGCAATTGTTGGGTTTGGAGAGGCAGATTGACTCTAAGCAGTTCATGAGTCTGATTGGGGTTGATGCCACAACCCTTTTCACTCCCCCTTCTGGGGCTTCCCTTGCAAAAGCTGTGGCTTCCAGGGAAATTTCGCTTTTGAACCCGATTTGGGTCTATGCAAGGACAACCCAGAAGCCATTTTATGCAGTACTGCATAGGATTGATGTTGGGGTTGTGATTGATTTGGAGCCTGCGCGGTTGAGTGACCCGGCATTGTCACTTGCTGGGGCTGTTCAGTCACAGAAGCTGGCTGTTAGGGCTATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGCCTCTTGTGTGACACTGTTGTTGAGGAAGTGCAGAAGCTTACTGGATATGACAGGGTTATGGTTTATAAGTTTCATGAGGATGATCATGGTGAGGTTGTATCTGAGATTAGGAGGTCAGATTTGGAGCCTTATTTGGGTTTGCATTATCCGGCCACGGATATCCCTCAAGCTTCTCGGTTCTTGTTCAAGCAAAACCGGGTCAGGATGATCTGTGATTGCCATGCAAAGCCGGTTAAGGTCATTCAGAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTGAACTCAACCCTAAGGTTACCACATGGTTGTCACACTCAGTACATGGCCAACATGGGCTCAATTGCCTCTCTGGTGATGGCAATCATAGTCAATGGAAAGGATGCAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCGCGCTATGTGTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAGCTTTACATGGAGATTCAATTGGCATCGCAAATGGCAGAGAAGAGAATTCTTAAAACACAAACCTTGCTGTGTGACATGCTCCTTCGTGATGCACCGTTTGGCATTGTTAATCAGTCCCCAAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCCTTGTATTATGAAGGAAACTGTTGGCTGTTAGGCACAACCCCAACTGAAGCACAGGTGAAAGACATAGCAGAATGGCTACTTAGTAATCATGAGGACTCAACAGGTTTGACAACAGATAGTTTGGCTGATGCTGGTTATCCAGGCGCTGCTTCGCTGGGCGATGCAGTTTGTGGCATGGCCACAGCAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTGAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAGGATGATGGAGGAAAAATGAACCCAAGATCATCATTTAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTCGCCTTGGGAAGTGTCAGAAATCAATGCCATTCACTCATTACAACTAATAATAAGAGATTCATTCCAAGACACAGAGAACACTGGTCCAAAGACTTTAAGTTGTGTACAGAAAAGTGACACTGCAACTGAAGGGATGGATGAACTCAGTTCAGTAGCACTTGAAATGGTGAGATTAATTGAGACAGCAACAGTCCCAATTTTTGGGGTTGATTCAGGTGGCGTAATCAATGGATGGAATGTGAAAATCGCGGAATTGACAGGTCTACAGGCCAGTGAAGCTATGGGAAAATCCCTGGTAAATGAAATTATACACGTGGACTCGTGTGACACTTTTAAAAATACTCTAAGCAGGGCCTTGCAAGGCCAGGAGGACAAAAATGTTGAGTTGAAAATAAAACACTTTGGGCTTGATCAACAACAGGAAGTTGTATATCTCATGGTCAATGCTTGCACTAGTAGGGACTACACAGATGCTATTATTGGGGTATGCTTTGTAGGTCAAGACATCACTTATGAGAAAGTGGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCAATCATACAGAGTCTGAGTCCACTGATTCCACCTATATTTTCTTCTGATGAGAATGCCTGCTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGCAAAGAGATGAAGTCATAGGAAAATTGCTTCCTGGTGAAATTTTTGGAAGTTTTTGTCGGCTAAAAGGTCAAGATACACTGACTAATTTTATGATTTTACTATACCGTGGAATAAGCGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAATTTATAGAGACTTATATAACAGCAAACAAGAGAATTGATGCTGGTGGGAATATGCTTGGCTGTTTCTGCTTCTTGCAGATTGTAACGCCAGACCTGAATCAACCCTCCGAAGAACACAAGCCTAGAGGCAGGGAAAGCATTTCTGAATCTAAAGAGTTGGCTTATATACTACAAGAGATGAAGAAACCTTTAAATGGTATACGATTCACACACAAACTTTTGGAAAATTCAACTGTCTCAGAAAACCAAAAACAATTTCTTGACACTAGTGATGCATGTGAAAGACAAATCATGGCAATTCTTGAGGATACAAATTTAGGAAGTATTAATGAAGGCAGCACTTTGCAGCTAAACATGGAAGAGTTTGTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATGTTGATAAGAGAAAAGAACTTACAACTGTTTCATGAAATTCCTGATGAAATAAAAATGCTTTCTCTATATGGTGACCAAATTAGGCTTCAGGTGGTCTTGTCTGACTTTTTGCGTAATGTAGTCAACCATACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAGATAATACAGGATGGCAATGAATTTATCCATCTGAAGTTCAGAATGACTCATTCTGGTCAAGGTATTCCTTCCGATGTTCTTCATGATATGTTTGAAGGAGGGAATCAATGGACTACACAAGAAGGTCTAGGACTATACATGTCCAGGAAAATCCTCAGTAGGATGAGTGGTCATGTCCACTACGTAAGAGAACAAAATAAGTGCTACTTTCTCATTGATCTTGAAATTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCATGCAGAGACAAGCATGTTAAGTTAG 3369 0.4221 MSFGSRGKLKDTSLSTSAESNMNTRRDKILAQYSADAEIMAEFEQSGVSGKSFDYSRMVVDPPRLVSEAKMTAYLSKIQRGGLIQPFGCMLAIEEATFRIIGYSDNCLQLLGLERQIDSKQFMSLIGVDATTLFTPPSGASLAKAVASREISLLNPIWVYARTTQKPFYAVLHRIDVGVVIDLEPARLSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRMICDCHAKPVKVIQSEELRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGKDATRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPFGIVNQSPSIMDLVKCDGAALYYEGNCWLLGTTPTEAQVKDIAEWLLSNHEDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSSPWEVSEINAIHSLQLIIRDSFQDTENTGPKTLSCVQKSDTATEGMDELSSVALEMVRLIETATVPIFGVDSGGVINGWNVKIAELTGLQASEAMGKSLVNEIIHVDSCDTFKNTLSRALQGQEDKNVELKIKHFGLDQQQEVVYLMVNACTSRDYTDAIIGVCFVGQDITYEKVVQDKFIKLEGDYKAIIQSLSPLIPPIFSSDENACCSEWNAAMERLTGWQRDEVIGKLLPGEIFGSFCRLKGQDTLTNFMILLYRGISGQDSEKLPFGFFDRNGEFIETYITANKRIDAGGNMLGCFCFLQIVTPDLNQPSEEHKPRGRESISESKELAYILQEMKKPLNGIRFTHKLLENSTVSENQKQFLDTSDACERQIMAILEDTNLGSINEGSTLQLNMEEFVLGNILDAIVSQVMMLIREKNLQLFHEIPDEIKMLSLYGDQIRLQVVLSDFLRNVVNHTPSPNGWVEIKISPGLKIIQDGNEFIHLKFRMTHSGQGIPSDVLHDMFEGGNQWTTQEGLGLYMSRKILSRMSGHVHYVREQNKCYFLIDLEIRTRKERQRNLHAETSMLS 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01925 1122 CDD PAS 749 857 IPR000014 -
Pumo2g01925 1122 SMART gaf_1 219 399 IPR003018 GO:0005515
Pumo2g01925 1122 Pfam GAF domain 219 389 IPR003018 GO:0005515
Pumo2g01925 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 948 1098 IPR036890 -
Pumo2g01925 1122 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Pumo2g01925 1122 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Pumo2g01925 1122 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Pumo2g01925 1122 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Pumo2g01925 1122 PRINTS Phytochrome signature 720 740 IPR001294 GO:0006355|GO:0009584
Pumo2g01925 1122 PRINTS Phytochrome signature 700 717 IPR001294 GO:0006355|GO:0009584
Pumo2g01925 1122 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Pumo2g01925 1122 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Pumo2g01925 1122 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Pumo2g01925 1122 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Pumo2g01925 1122 SMART HisKA_10 879 944 IPR003661 GO:0000155|GO:0007165
Pumo2g01925 1122 SMART HKATPase_4 992 1106 IPR003594 -
Pumo2g01925 1122 Gene3D PAS domain 751 862 - -
Pumo2g01925 1122 FunFam Phytochrome 600 732 - -
Pumo2g01925 1122 Gene3D - 922 1098 IPR036890 -
Pumo2g01925 1122 Pfam PAS fold 738 857 IPR013767 GO:0006355
Pumo2g01925 1122 Pfam PAS fold 607 722 IPR013767 GO:0006355
Pumo2g01925 1122 Coils Coil 665 685 - -
Pumo2g01925 1122 SUPERFAMILY GAF domain-like 199 385 - -
Pumo2g01925 1122 CDD HATPase_Phy-like 991 1104 IPR044767 -
Pumo2g01925 1122 Gene3D PAS domain 605 726 - -
Pumo2g01925 1122 ProSiteProfiles PAS repeat profile. 738 783 IPR000014 -
Pumo2g01925 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 610 718 IPR035965 -
Pumo2g01925 1122 Pfam Phytochrome region 402 577 IPR013515 GO:0006355|GO:0009584
Pumo2g01925 1122 SUPERFAMILY GAF domain-like 397 575 - -
Pumo2g01925 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 752 854 IPR035965 -
Pumo2g01925 1122 FunFam Phytochrome 394 524 - -
Pumo2g01925 1122 FunFam Phytochrome 751 859 - -
Pumo2g01925 1122 SMART pas_2 737 807 IPR000014 -
Pumo2g01925 1122 SMART pas_2 606 673 IPR000014 -
Pumo2g01925 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 992 1093 IPR003594 -
Pumo2g01925 1122 Gene3D - 200 550 IPR029016 -
Pumo2g01925 1122 ProSiteProfiles Histidine kinase domain profile. 886 1106 IPR005467 -
Pumo2g01925 1122 Pfam PAS fold 73 186 IPR013654 GO:0006355
Pumo2g01925 1122 Gene3D PAS domain 77 322 - -
Pumo2g01925 1122 Pfam His Kinase A (phospho-acceptor) domain 881 942 IPR003661 GO:0000155|GO:0007165
Pumo2g01925 1122 CDD PAS 615 722 IPR000014 -
Pumo2g01925 1122 PANTHER OS08G0260000 PROTEIN 70 940 - -
Pumo2g01925 1122 PIRSF Phytochrome_conventional 7 1113 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pumo2g01925 1122 FunFam Phytochrome 943 1110 - -
Pumo2g01925 1122 CDD HisKA 879 934 IPR003661 GO:0000155|GO:0007165
Pumo2g01925 1122 MobiDBLite consensus disorder prediction 1 21 - -
Pumo2g01925 1122 Gene3D - 394 567 IPR043150 -
Pumo2g01925 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Pumo2g01925 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 186 IPR035965 -
Pumo2g01925 1122 ProSiteProfiles PAS repeat profile. 604 675 IPR000014 -
Pumo2g01925 1122 NCBIfam PAS domain S-box protein 611 729 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01925 Pumo-Chr2 37011165 37018055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01925 15 1106 Histidine Kinase Gene Family AT4G18130 63.859 0.0 1475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01925 K12123 - gmx:100808192 2125.52