Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01986 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGGAAAGGCTTATGGTCCCCCGAAGAAGATGAGAAGCTTTTCAATTACATAACCAGATTTGGCGTTGGCTGCTGGAGTTCCGTTCCCAAACAAGCCGGACTACAAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCTCAACAAGAGGAGGATCTTATAATTAGTCTCCATGAAGTTCTAGGAAATAGGTGGGCTCAAATTGCAGCTCAATTACAAGGGAGAACAGATAATGAGATTAAGAACTTTTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCTGCAACACACAAGCCTCTCCTCACTAGTGCTGAAGATCACATAATAAAGGAAGAGAAGGAAACCATGGAGACACCGCCACCACCTATGCTATTGCCAGTGTCTCAAGGAATTTTAGTTTCCTCACAAGAGTCACCACTTGTAGTGATGAACAATTCAAATTACTATGATGGTGGACTAAATGTAACAGAAGCTTCAAGGGCTTTAGACCCTTTGTCCTACTTTGAATTCCAAATGGGTTACAATTCAAGTGTGAGTCAGTGCCACCCAATTAGACAATTTGATCAGAATAACCAGGTGGGGACCAATTCAAGCTATGGATTCTCCTCATTGCCGTGTCTGAATATTTCTGATCACGGGAACGTGTCGGTGGCAGAGTTTTCTGATAACAACTCAGCCTCTAAAATCAGTTCTATGTTGAAGGAAAGTTCCAGCAATAGCTCAAGCATGAGTGTTTATCCTGGGGGAGGGTGTCAAATGATGGAAAATGCAGGGTTCTCATGGGATAATGAGAACAATAATAATAAGATTGATCCTTTGCTACAGTTTCAAGTCAATGTCGTAAAATCTGAAGAGTTCATCAAGACAAGCTCGTGGCAAGAAGAGCAGATTCTGACTCAGAATTCGATAGATTTCACTAGCTATCCGTTAATGTCACTGTCTGAGGATCTAACCGGAGCAAATTTTGATGTGTTCCAGCAGATGTGA 1074 0.4143 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLQGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLLTSAEDHIIKEEKETMETPPPPMLLPVSQGILVSSQESPLVVMNNSNYYDGGLNVTEASRALDPLSYFEFQMGYNSSVSQCHPIRQFDQNNQVGTNSSYGFSSLPCLNISDHGNVSVAEFSDNNSASKISSMLKESSSNSSSMSVYPGGGCQMMENAGFSWDNENNNNKIDPLLQFQVNVVKSEEFIKTSSWQEEQILTQNSIDFTSYPLMSLSEDLTGANFDVFQQM 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01986 357 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo10g01986 357 FunFam Myb transcription factor 11 67 - -
Pumo10g01986 357 CDD SANT 70 109 IPR001005 -
Pumo10g01986 357 SMART sant 66 114 IPR001005 -
Pumo10g01986 357 SMART sant 13 63 IPR001005 -
Pumo10g01986 357 Gene3D - 11 67 - -
Pumo10g01986 357 FunFam Transcription factor MYB86 69 138 - -
Pumo10g01986 357 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo10g01986 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pumo10g01986 357 CDD SANT 17 61 IPR001005 -
Pumo10g01986 357 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pumo10g01986 357 PANTHER MYB DOMAIN PROTEIN 55 1 292 - -
Pumo10g01986 357 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo10g01986 357 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo10g01986 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pumo10g01986 357 Gene3D - 69 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01986 Pumo-Chr10 26177879 26179734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01986 1 134 MYB Transcription Factor Family AT4G01680 84.328 4.31e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g01986 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01986 K09422 - gmx:100799243 560.066