Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01674 ATGGCTTCAGGTAGCAGAGCTGGAATTTCAGCACACCAAGCACAGTCTTCAGGCACAAGCAATAAGAGAGGCCATAACAGTGAGTCTGTCAGCAAAGCGATTGCACAGTATACACAGGATGCTCGTCTTCATGCGGTCTTCGAGCAGTCTGGACAGTCTGGTAAGTCCTTTGACTACTCACAGTCCATACGAACAACCTTTCATTCTGTACCCGAACAGCAAATCACAGCTTACCTAGTGAAAATTCAAAGGGGTGGCCATATACAGCCCTTTGGTTGTATGATTGCCATCGATGAATCTAGCTTCAGAGTCATTGCCTACAGCGAAAACGCTAGAGAGATGTTGGGTATTACCCCACAGTCAGTTCCTAGTCTAGAAAAGTCTGAAATTTTAACAATTGGAGCGGATGTTCGTGCACTTTTCACACCCTCAAGTGCAGTTCTACTGGAGAAGGCATTTGCGGCTCGTGAAATTACCTTGCTGAATCCGGTTTGGATTCATTCTAAGAATTCTGGGAAGCCATTTTATGCTATATTGCATAGGATTGACGTGGGAATTTTGATTGATTTGGAGCCTGCAAGGACAGAAGACCCTGCTCTTTCTATTGCCGGGGCTGTGCAGTCACAGAAGCTGGCTGTTCGGGCAATATCGCGCCTGCAATCGCTTCCTGGCGGTGACGTTAAGCTGTTGTGTGACACTGTGGTAGAGAGTGTGCGAGAACTTACTGGTTATGATAGGGTGATGGTGTATAAATTCCACGAGGATGAGCATGGGGAGGTTGTTGCCGAGAGCAAGAGGCCGGATTTGGAACCGTACATTGGATTACATTATCCTGCAACTGATATTCCTCAAGCATCAAGATTTTTGTTCAAGCAGAACAGGGTGCGGATGATTGTAGATTGTAAAGGCACGCCGGTTAAGGTTATTCAGGATGAGGCACTTGCGCAGCCGTTATGCTTAGTTGGATCGACTCTTCGCGCTCCACATGGTTGTCATGCACAGTACATGGCCAACATGGGTTCAATGGCCTCACTGGTAATGGCAGTGATAATCAATGGAAACGATGAGGAAGCTGTTGGTGACCATATTCCAATGAGGCTATGGGGCATGGTTGTTTGTCATCATACATCACCTAGAAGCATTCCTTTTCCTCTACGCTATGCTTGTGAATTCCTTATGCAAGCATTTGGACTTCAACTGAATATGGAACTCCAATTAGCCTCACAATTAGCAGAAAAACGTGTGCTGAGGACTCAGACTCTCTTGTGTGATATGCTTCTTCGCGATTCGCCTACTGGCGTTGTTACTCAAAGCCCAAGCATAATGGACCTTGTGAAGTGTGATGGTGCTGCGCTACACTACCAAGGAAACTACTATCCTTTAGGTGTAACCCCAACTAAATCCCAGATAAAGGACATTATTGATTGGTTGTTAGCTTTACATGCAGATTCAACAGGCTTAAGCACAGATAGTTTGGCTGAGGCAGGGTATCCTGGTGCTGCTTCCTTAGGCGAAGCAGTTTGTGGAATGGCAGTAGCATATATCACAAAAAGGGATTTTCTGTTCTGGTTCAGATCCCACACAGCAAAAGAGATGAAATGGGGTGGTGCAAAACATCATCCAGAAGACAAGGATGACAGTCTGAGAATGCATCCCCGTTCTTCTTTCAAGGCATTTTTGGAAGTGGTTAAAAGACGTAGTTTACCATGGGAGAATGCAGAAATGGATGCTATTCATTCTTTGCAGCTCATTCTACGGGACTCATTTAGAGATGCAGAACCAAACAATTCAAAGGCTATTATAAGTCATCAGATGGGGGGTCTAGAGTTGCATGGTGTGGATGAGCTAAGCTCTGTGGCAAGAGAAATGGTTAGATTGATTGAGACTGCTACTGTTCCCATATTTGCCGTAGATGTTGATGGCTGCATAAATGGATGGAATGCCAAGATTGCTGAGTTGACAGGGCTTCCAATTGAGGAAGCTATGGGAAAGTCTTTACTACGTGATCTTGTGTATAGAGAGTCCGAAGAAACTGTTGAACAGCTTCTATCTCGTGCTTTAAGAGGTGAAGAAGATAAGAATGTCGAGATAAAGCTGAAGACATTTATGGCAGGAAATCACAAAGCAGTTTTTGTATTGGTGAATGCTTGCTCTAGCAAGGATTATTTGAATAATATAGTTGGCATATCCTTTGTGGGTCAGGATGTTACCTGTCAAAAAATCGTAATGGACAAGTTTGTTCACATACAAGGAGATTACAAGGCCATTGTCCATAGTCCAAATCCTTTGATCCCTCCCATATTTGCTACAGATGATAATGCATGTTGCTCAGAGTGGAACAATGCTATGGAAAAACTCACAGGCTGGACCCATGAAGAGGTTCTAGGAAAGATGTTGGTTGGGGAGGTATTTGGGAGTTGCTGTAGATTGAAGGGACCGGATGCTCTAACCAAATTCATGATTGTGTTGCACAATGCCATTGGTGGCCAAGACGTTGACAGATCTCCATTCTCATTCTATGATAGGAATGGAAAATTTGTGGAAGCTCTCTTGACAGCAAACAAAAGGGTTAATATGGACGGTCAGATTATTGGGGCTTTCTGTTTCTTGCAGATTGCTAGTCCTGAACTGCAGCAAGCCCTCAAAATGCAGAGGGAACAAGAGAAGAAATGCTTTGCAATGATGAAGGATTTGACTTATATTTGCAGGGAAATAAAGAATCCCCTGAATGGGATACGATTTGCCAACTCTCTTTTGGAGGCTACAGAACTGACTGATGATCAAAGGCAGTTTCTTGAGACGAGTACTGCTTGTGAAAAGCAGATGCTGAAGATTCTTAAAGATGTCGATCTGGAGAGCATTGAGGATGGGTCATTGGAGCTTGAAAAAGCAGAATTCTTGCTTGGAAGTGTTATAAATGCTGTTGTTAGCCAAGTAATGCTGTTGCTAAGAGAAAGAGATTTACAACTGATTCGTGATATACCTGAAGAAATTAAGTCATGGGCAGTTTATGGTGATCAAGTGAGAATCCAGCAAGTCTTAGCTGGTTTTTTACTGAATATGGTTCGCTGTGCACCATCACCTGATGGTTGGGTAGAGATTTATGTTCATCCAATCTTGAAAAGAATTTCTGAAAGTCTCACTCTTATTCATGTTGAGTTCAGAATTGCATGTCCTGGTGATGGTCTTCTACCTGAACTGGTTCAAGATATGTTCCACAATAGTCATTGGATGACTCAAGAAGGCCTGGGGCTGAGTATGTGCAGGAAGATCCTCAAGCTGATGGGTGGTGATGTCCAATATATCAGGGAGTCAGAGAGATGCTATTTCTTAATTCTACTTGAACTACCAATGACTCAGAGGGTCAGAGTGTAA 3375 0.4356 MASGSRAGISAHQAQSSGTSNKRGHNSESVSKAIAQYTQDARLHAVFEQSGQSGKSFDYSQSIRTTFHSVPEQQITAYLVKIQRGGHIQPFGCMIAIDESSFRVIAYSENAREMLGITPQSVPSLEKSEILTIGADVRALFTPSSAVLLEKAFAAREITLLNPVWIHSKNSGKPFYAILHRIDVGILIDLEPARTEDPALSIAGAVQSQKLAVRAISRLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCKGTPVKVIQDEALAQPLCLVGSTLRAPHGCHAQYMANMGSMASLVMAVIINGNDEEAVGDHIPMRLWGMVVCHHTSPRSIPFPLRYACEFLMQAFGLQLNMELQLASQLAEKRVLRTQTLLCDMLLRDSPTGVVTQSPSIMDLVKCDGAALHYQGNYYPLGVTPTKSQIKDIIDWLLALHADSTGLSTDSLAEAGYPGAASLGEAVCGMAVAYITKRDFLFWFRSHTAKEMKWGGAKHHPEDKDDSLRMHPRSSFKAFLEVVKRRSLPWENAEMDAIHSLQLILRDSFRDAEPNNSKAIISHQMGGLELHGVDELSSVAREMVRLIETATVPIFAVDVDGCINGWNAKIAELTGLPIEEAMGKSLLRDLVYRESEETVEQLLSRALRGEEDKNVEIKLKTFMAGNHKAVFVLVNACSSKDYLNNIVGISFVGQDVTCQKIVMDKFVHIQGDYKAIVHSPNPLIPPIFATDDNACCSEWNNAMEKLTGWTHEEVLGKMLVGEVFGSCCRLKGPDALTKFMIVLHNAIGGQDVDRSPFSFYDRNGKFVEALLTANKRVNMDGQIIGAFCFLQIASPELQQALKMQREQEKKCFAMMKDLTYICREIKNPLNGIRFANSLLEATELTDDQRQFLETSTACEKQMLKILKDVDLESIEDGSLELEKAEFLLGSVINAVVSQVMLLLRERDLQLIRDIPEEIKSWAVYGDQVRIQQVLAGFLLNMVRCAPSPDGWVEIYVHPILKRISESLTLIHVEFRIACPGDGLLPELVQDMFHNSHWMTQEGLGLSMCRKILKLMGGDVQYIRESERCYFLILLELPMTQRVRV* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01674 1124 FunFam Phytochrome 409 539 - -
Pte2g01674 1124 FunFam Phytochrome 615 746 - -
Pte2g01674 1124 Pfam His Kinase A (phospho-acceptor) domain 899 957 IPR003661 GO:0000155|GO:0007165
Pte2g01674 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 394 IPR016132 -
Pte2g01674 1124 SMART gaf_1 226 414 IPR003018 GO:0005515
Pte2g01674 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 766 869 IPR035965 -
Pte2g01674 1124 CDD PAS 630 736 IPR000014 -
Pte2g01674 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Pte2g01674 1124 Gene3D - 957 1122 IPR036890 -
Pte2g01674 1124 FunFam Phytochrome 874 955 - -
Pte2g01674 1124 ProSiteProfiles PAS repeat profile. 752 804 IPR000014 -
Pte2g01674 1124 NCBIfam PAS domain S-box protein 626 739 IPR000014 -
Pte2g01674 1124 FunFam Phytochrome 956 1122 - -
Pte2g01674 1124 Gene3D PAS domain 765 873 - -
Pte2g01674 1124 ProSiteProfiles PAS repeat profile. 619 690 IPR000014 -
Pte2g01674 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 730 IPR035965 -
Pte2g01674 1124 SUPERFAMILY GAF domain-like 412 589 - -
Pte2g01674 1124 CDD HisKA 898 949 IPR003661 GO:0000155|GO:0007165
Pte2g01674 1124 PANTHER OS08G0260000 PROTEIN 73 955 - -
Pte2g01674 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1005 1111 IPR003594 -
Pte2g01674 1124 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 881 949 IPR036097 GO:0000155|GO:0007165
Pte2g01674 1124 SUPERFAMILY GAF domain-like 206 401 - -
Pte2g01674 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 968 1114 IPR036890 -
Pte2g01674 1124 CDD HATPase_Phy-like 1004 1116 IPR044767 -
Pte2g01674 1124 Pfam PAS fold 752 871 IPR013767 GO:0006355
Pte2g01674 1124 Pfam PAS fold 622 736 IPR013767 GO:0006355
Pte2g01674 1124 Gene3D - 409 582 IPR043150 -
Pte2g01674 1124 Gene3D PAS domain 617 740 - -
Pte2g01674 1124 Gene3D PAS domain 81 329 - -
Pte2g01674 1124 PRINTS Phytochrome signature 641 656 IPR001294 GO:0006355|GO:0009584
Pte2g01674 1124 PRINTS Phytochrome signature 519 538 IPR001294 GO:0006355|GO:0009584
Pte2g01674 1124 PRINTS Phytochrome signature 714 731 IPR001294 GO:0006355|GO:0009584
Pte2g01674 1124 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355|GO:0009584
Pte2g01674 1124 PRINTS Phytochrome signature 734 754 IPR001294 GO:0006355|GO:0009584
Pte2g01674 1124 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355|GO:0009584
Pte2g01674 1124 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355|GO:0009584
Pte2g01674 1124 PRINTS Phytochrome signature 434 454 IPR001294 GO:0006355|GO:0009584
Pte2g01674 1124 PRINTS Phytochrome signature 622 638 IPR001294 GO:0006355|GO:0009584
Pte2g01674 1124 PRINTS Phytochrome signature 552 570 IPR001294 GO:0006355|GO:0009584
Pte2g01674 1124 SMART pas_2 621 688 IPR000014 -
Pte2g01674 1124 SMART pas_2 751 821 IPR000014 -
Pte2g01674 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 196 IPR035965 -
Pte2g01674 1124 SMART HKATPase_4 1005 1120 IPR003594 -
Pte2g01674 1124 ProSiteProfiles Histidine kinase domain profile. 900 1120 IPR005467 -
Pte2g01674 1124 Gene3D - 207 565 IPR029016 -
Pte2g01674 1124 CDD PAS 763 871 IPR000014 -
Pte2g01674 1124 Pfam PAS fold 77 193 IPR013654 GO:0006355
Pte2g01674 1124 Pfam GAF domain 227 404 IPR003018 GO:0005515
Pte2g01674 1124 Gene3D - 874 956 - -
Pte2g01674 1124 FunFam Phytochrome 765 873 - -
Pte2g01674 1124 SMART HisKA_10 894 957 IPR003661 GO:0000155|GO:0007165
Pte2g01674 1124 Pfam Phytochrome region 417 590 IPR013515 GO:0006355|GO:0009584
Pte2g01674 1124 MobiDBLite consensus disorder prediction 1 30 - -
Pte2g01674 1124 PIRSF Phytochrome_conventional 9 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01674 Pte-Chr2 35780914 35787621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01674 5 1118 Histidine Kinase Gene Family AT4G16250 72.583 0.0 1714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01674 K12121 - zju:107418995 1932.15