Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02925 TTGAAGTTTAGTCAATTAACCCATAATAATAATATGGGAAAGTCAGAGTTGTAGGGATTATGAACGGAGGCTGTAAAAGCTGCAACTTGCTGTTTATGGTGCAGTCATCATCACATGTCCATTCCCTATTTAGAAACCATTCCATTTTTTAATAATAATAACATTAAATATAAGTGAGCACCAGGTAGGGAGTATTAAATTATTATCACACATGTAGATGCAGCTGAAAAAATTAAGTTGCTAGCCTATTGCCAAGCTGCTTCTGCTTCTGCTTCTATTCAAACCTTCTTTCTGCTCATTCGTTGAATCAGAATTTTCCTTGCAAGTTGAAGTAACAATGTCCTCCTCAAGGCCTAGCCAAACATCCAGCAATAATTCCGGCAGATCTAGATCATCAAGACACGGCGCTAGGGTTATTGCTCAAACAACTTTAGATGCAAAACTGCATGCCAGTTTTGAGGAATCAGGTAGTTCTTTTGACTACTCCAATTCAGTGAGATTGTCTCCTGGTGGTACAGGCACTGTAAGTGGAGACCATCAACCAAGGTCTGATAGCGTGACAACTGCTTACCTACATCAGATACAGAAAAGCAAGCTTATCCAGCCATTTGGGTGTTTGTTAGCCTTAGATGAGAAAACATGTAAGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGTCATGCTGTCCCCAGTGTTGGTGACCACCCTGCTCTTGGCATTGGCACTGATATAAGAACTATTTTCACTGCCCCTAGTGCTGCTGCTATTCAGAAGGCTCTAGGATTTGGGGAGGTTTCACTTCTTAACCCCATTCTAGTCCATTGCAAGAGCTCTGGGAAGCCCTTTTATGCAATTATCCATCGAGTTACTGGCAGTGTGATCGTTGATTTTGAGCCGGTCAAGCCTCATGAAGTTCCCATGACTGCAGCAGGTGCCCTGCAATCCTACAAGCTTGCTGCAAAAGCTATAACTAGATTGCAATCCTTGCCTAGTGGAAACATGGGAACACTTTGTGATACCATGGTTCAAGAGGTTTTCGAGCTCACAGGTTATGACAGAGTGATGGCTTATAAATTTCATGATGATGATCATGGAGAAGTGATTGCCGAGATGACAAGGCCAGGCCTAGAGCCTTATCTGGGGTTACACTACCCAGCCACTGATATTCCTCAGGCTACACGCTTTTTATTTATGAAGAACAAGGTGCGTATGATAGTTGACTGTCGTGCAAAGCATGTGAAGGTGCTTCAAGACAAAAAAATTCCATTTGAATTAACTTTGTGTGGATCAACCTTGAGAGCTGCTCATAGTTGCCACTTGCAATACATGGAGAACATGAATTCCAGTGCTTCCTTGGTTATGGCAGTTGTGGTCAATGACAACGATGAAGATGGGGATAGTTCTGATGCTGTTCAGCCTCAGAAGAGAAAGAGACTATGGGGTTTAGTAGTTTGTCATCATTCTACTCCCAGGTTTATCCCTTTCCCTCTTAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTAAACAAAGAACTAGAGATAGAGTATCAAATTGTTGAGAAGAACATATTGCAGACTCAGACTCTCCTGTGTGATATGCTGATGCGAGATGCTCCCCTGGGCATTGTATCGCAAAGTCCTAATGTAATGGATCTTGTGAAGTGTGATGGTGCAGCTCTCTTGTATAAAAACAAGGTGTGGAGATTAGGGGTAACACCAAGTGAACCTCAGATAAGAGAAATAGCTTCCTGGCTCTCTGAGTACCATAGGGATTCCACAGGTTTAAGTACAGATAGCTTGTCTGATGCCGGCTTCCCTGGAGCTGCTGCTCTTGGTGAAATTGCATGTGGAATGGCGGCTGTCAGAATAGCTTCCAAAGATATAGTTTTCTGGTTTCGGTCTCACACTGCTGCAGAAATCCGATGGGGAGGTGCAAAGCATGAGCCTGGTGAAAGGGATGATGGTAGGAGGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTTGTGAAGACAAGGAGCTTACCCTGGAAGGACTATGAAATGGATGCCATTCATTCATTGCAGTTAATACTGAGAAACGCATTCAAAGAGACCGAGAGTATGGAGATAAGCACATATGCTATCAATACAAGACTAGGCGATTTGAAGATTGAAGGGATGCAAGAACTGGAAGCAGTGACAAGTGAGATGGTAAGGTTAATTGAAACAGCAACTGTGCCAATTTTGGCAGTTGATGTTAACGGGATGGTCAATGGATGGAATACGAAGATTGCTGAGTTGACATGTCTTCCAGTTGAGTTGGCTATAGGGAAGCATTTACTCTCTCTTGTTGAAGATTTATCAGTAGATAGAGTCAAGAAAATGTTGGACATGGCACTGCAGGGTGAGGAAGAGAAAAATGTGCAATTTGAGATCAAAACACATGATATGAAGATTGATTCTGGTCCTATCAGTTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATGTTGTGGGAGTTTGTTTTGTTGCCCAAGATATAACTGCTCAGAAGACAGTGATGGACAAATTCACCCGAATTGAAGGTGACTACAAGGCAATTGTACAGAACCCAAACCCATTGATCCCTCCAATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAATGGAATTCAGCCATGACAAAATTAACAGGATTGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGAGAGGTTTTCGGGACCCAGATAGCTAGTTGTCGTCTAAGGAACCAAGAAGCTGTTGTTAATTTTAGCATTGTACTTAATAAAGCCATGGCCGGTTTAGAAACAGAGAAGGTTCCTTTTGGTTTCGTTACTCGTGATGGGAAGAAGTATGTAGAATGTCTGCTTTCTGTGAGTAAGAAATTGGATGCAGAGGGTGTTGTTACTGGAGTCTTCTGCTTCTTGCAACTAGCTAGTCCAGAGCTGCAACAAGCATTACACATTCAACACCTATCTGAACAAACTGCCTTGAAGAGACTGAAAGCTTTGACTTATTTAAAAAGGCAAATCCGGAATCCTTTATATGGAATTGTTTTCTCCCGGAAATTGTTAGAAGGTACTGAGTTGGGATTTGAACAAAAACAATTTCTGCAAACAGGCACTCGGTGTCAACACCAGCTTAGCAAAATTCTTGAAGACTCAGATCTTGACAGTATCATTGATGGCTACATGGATTTGGAGATGGTTGAATTCACTCTGCATGAAGTTTTGGTTGCCTCCCTAAGTCAAGTCATGGCAAAGAGTAATGCAAAAGGTATCCGAGTAGTCAATGATGTTGAAGAACAGATCACAACAGAAACGTTATATGGTGATAGTCTCAGGCTCCAGCAGGTCTTAGCTGACTTTTTATTGATTTCCATCAATTACACACCAACTGGAAGCCAGGTGGTTGTAGCAGCCACGTTAGCCAAACAGCAGTTAGGGAAACTTGTCCATCTTGCTAATTTGGAGCTCAGCATAACACATGATGGTTTTGGGGTTCCAGAATCCTTGCTAAACCAAATGTTTGGACGTGATGGACATGAATCTGAGGTGGGTATTAGCATGCTGATTAGCAGAAAGCTGCTAAAGCTTATGAATGGAGACGTACGTTATATAAGGGAAGCAGGCAAATCATCTTTCATCTTATCTGTTGAACTTGCGGCAGCACAAGAATCCAAGGCTTAAGTTTGGAAATAAAATCAAACCATTTTTTTCGACATCAGAAAATGAAGGGAGCAAATTTGCATTCCTTGTTCAATATTTAACTCTTGTTATTATGTACCTTCTGCAAGGTGATGTAAATATGTAATTTATAACTAACTATTCACACACTATACTAACCTGCTCTCGTCTCCAGAAATTATGGGTAATTTGCAGCAATATGAAATATAAGAACTAACTAGGAACATGTTAAATGGCATTCTTTTC 3982 0.4154 MSSSRPSQTSSNNSGRSRSSRHGARVIAQTTLDAKLHASFEESGSSFDYSNSVRLSPGGTGTVSGDHQPRSDSVTTAYLHQIQKSKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSAAAIQKALGFGEVSLLNPILVHCKSSGKPFYAIIHRVTGSVIVDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGNMGTLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVIAEMTRPGLEPYLGLHYPATDIPQATRFLFMKNKVRMIVDCRAKHVKVLQDKKIPFELTLCGSTLRAAHSCHLQYMENMNSSASLVMAVVVNDNDEDGDSSDAVQPQKRKRLWGLVVCHHSTPRFIPFPLRYACEFLAQVFAIHVNKELEIEYQIVEKNILQTQTLLCDMLMRDAPLGIVSQSPNVMDLVKCDGAALLYKNKVWRLGVTPSEPQIREIASWLSEYHRDSTGLSTDSLSDAGFPGAAALGEIACGMAAVRIASKDIVFWFRSHTAAEIRWGGAKHEPGERDDGRRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKETESMEISTYAINTRLGDLKIEGMQELEAVTSEMVRLIETATVPILAVDVNGMVNGWNTKIAELTCLPVELAIGKHLLSLVEDLSVDRVKKMLDMALQGEEEKNVQFEIKTHDMKIDSGPISLVVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMTKLTGLKREEVMDKMLLGEVFGTQIASCRLRNQEAVVNFSIVLNKAMAGLETEKVPFGFVTRDGKKYVECLLSVSKKLDAEGVVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYLKRQIRNPLYGIVFSRKLLEGTELGFEQKQFLQTGTRCQHQLSKILEDSDLDSIIDGYMDLEMVEFTLHEVLVASLSQVMAKSNAKGIRVVNDVEEQITTETLYGDSLRLQQVLADFLLISINYTPTGSQVVVAATLAKQQLGKLVHLANLELSITHDGFGVPESLLNQMFGRDGHESEVGISMLISRKLLKLMNGDVRYIREAGKSSFILSVELAAAQESKA 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02925 1133 PANTHER TWO-COMPONENT HISTIDINE KINASE 915 1124 - -
Pste5g02925 1133 Pfam PAS fold 758 881 IPR013767 GO:0006355
Pste5g02925 1133 Pfam PAS fold 628 742 IPR013767 GO:0006355
Pste5g02925 1133 Pfam Phytochrome region 422 597 IPR013515 GO:0006355|GO:0009584
Pste5g02925 1133 ProSiteProfiles PAS repeat profile. 758 810 IPR000014 -
Pste5g02925 1133 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 966 1119 IPR036890 -
Pste5g02925 1133 PIRSF Phytochrome_conventional 1 1133 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pste5g02925 1133 ProSiteProfiles PAS repeat profile. 625 695 IPR000014 -
Pste5g02925 1133 FunFam Phytochrome 621 752 - -
Pste5g02925 1133 SMART HisKA_10 903 968 IPR003661 GO:0000155|GO:0007165
Pste5g02925 1133 MobiDBLite consensus disorder prediction 1 24 - -
Pste5g02925 1133 SMART pas_2 627 693 IPR000014 -
Pste5g02925 1133 SMART pas_2 757 826 IPR000014 -
Pste5g02925 1133 Gene3D - 414 587 IPR043150 -
Pste5g02925 1133 Pfam PAS fold 77 193 IPR013654 GO:0006355
Pste5g02925 1133 Gene3D PAS domain 771 884 - -
Pste5g02925 1133 Gene3D - 966 1131 IPR036890 -
Pste5g02925 1133 NCBIfam PAS domain S-box protein 632 748 IPR000014 -
Pste5g02925 1133 SUPERFAMILY GAF domain-like 417 596 - -
Pste5g02925 1133 Pfam GAF domain 227 409 IPR003018 GO:0005515
Pste5g02925 1133 FunFam Phytochrome 414 545 - -
Pste5g02925 1133 Gene3D PAS domain 619 756 - -
Pste5g02925 1133 SUPERFAMILY PYP-like sensor domain (PAS domain) 772 879 IPR035965 -
Pste5g02925 1133 PRINTS Phytochrome signature 628 644 IPR001294 GO:0006355|GO:0009584
Pste5g02925 1133 PRINTS Phytochrome signature 647 662 IPR001294 GO:0006355|GO:0009584
Pste5g02925 1133 PRINTS Phytochrome signature 740 760 IPR001294 GO:0006355|GO:0009584
Pste5g02925 1133 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355|GO:0009584
Pste5g02925 1133 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355|GO:0009584
Pste5g02925 1133 PRINTS Phytochrome signature 524 543 IPR001294 GO:0006355|GO:0009584
Pste5g02925 1133 PRINTS Phytochrome signature 439 459 IPR001294 GO:0006355|GO:0009584
Pste5g02925 1133 PRINTS Phytochrome signature 557 575 IPR001294 GO:0006355|GO:0009584
Pste5g02925 1133 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355|GO:0009584
Pste5g02925 1133 PRINTS Phytochrome signature 720 737 IPR001294 GO:0006355|GO:0009584
Pste5g02925 1133 SUPERFAMILY GAF domain-like 206 406 - -
Pste5g02925 1133 Coils Coil 406 426 - -
Pste5g02925 1133 SMART HKATPase_4 1015 1127 IPR003594 -
Pste5g02925 1133 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1015 1124 IPR003594 -
Pste5g02925 1133 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 399 IPR016132 -
Pste5g02925 1133 Gene3D PAS domain 81 329 - -
Pste5g02925 1133 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 195 IPR035965 -
Pste5g02925 1133 CDD PAS 636 742 IPR000014 -
Pste5g02925 1133 SUPERFAMILY PYP-like sensor domain (PAS domain) 631 738 IPR035965 -
Pste5g02925 1133 CDD PAS 769 881 IPR000014 -
Pste5g02925 1133 SMART gaf_1 226 419 IPR003018 GO:0005515
Pste5g02925 1133 ProSiteProfiles Histidine kinase domain profile. 910 1129 IPR005467 -
Pste5g02925 1133 Gene3D - 207 570 IPR029016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02925 Pste-Chr5 21993376 21999061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02925 1 1130 Histidine Kinase Gene Family AT1G09570 76.481 0.0 1812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02925 5 21993376 21999061 Pste5g02925 5 21993376 21999061 ECH
Pste5g02925 5 21993376 21999061 Pste4g01380 4 10245845 10251216 PCT