Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3595 ATGTCAACCACGAGGCCTAGCCAATCGTCCAACAATTCGGGGAGGTCAAGAAATAGTGCTAGGATTATTGCTCAGACGACTGTGGATGCAAAGCTTCATGCAACTTTTGAGGAGTCCGGTAGTTCGTTTGACTACTCGAGTTCGGTGCGTGTTTCTGGCTCGGTGGATGGAGATCAACAACCGAGGTCCAACAAAGTGACGACGGCTTACCTCAATCATATACAGAGAGGTAAGCAGATCCAGCCTTTCGGGTGCTTGCTAGCTTTAGATGAGAAAACGTGCAAGGTTGTTGCGTATAGTGAGAATGCGCCTGAGATGCTGACTATGGTGAGTCATGCTGTTCCTAGCGTTGGTGACCATCCTGCTCTTGGCATTGGAACTGACATAAGGACTGTTTTCACTGCGCCGAGTGCTTCTGCCTTGCAGAAGGCGCTAGGGTTTGCGGAGGTTTCACTTCTTAACCCGATTCTTGTTCATTGCAAGACTTCTGGGAAGCCGTTTTACGCGATCATTCATCGTGTTACTGGTAGTTTGATCATTGACTTTGAGCCGGTGAAGCCTTATGAAGTTCCCATGACTGCTGCGGGTGCCTTGCAATCTTACAAACTTGCTGCTAAAGCAATTACAAGATTGCAATCTTTGGCTAGTGGCAGCATGGAAAGGCTTTGTGATACCATGGTTCAAGAAGTTTTTGAACTAACGGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGATGATCACGGGGAGGTGATTGCTGAGATAGCAAAGCCAGGCCTAGAGCCATATCTAGGTCTGCACTATCCGGCGACAGATATTCCCCAGGCTGCGCGGTTTCTATTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTAATGCAAAACATGTGAAGGTTCTTCAAGACGAAAAACTCCCATTTGATTTGACTCTGTGCGGTTCGACCTTGAGAGCTCCACATAGTTGCCATTTGCAGTACATGGCTAACATGGATTCAATTGCTTCGTTGGTTATGGCAGTTGTCGTCAATGACAGCGATGAAGATGGAGATAGCGCTGACGCAGTTCTCCCACAAAAGAAAAAGAGACTTTGGGGTTTGGTAGTTTGTCATAACACTACTCCAAGGTTTGTTCCTTTTCCTCTAAGGTATGCTTGTGAGTTTCTGGCTCAAGTGTTTGCCATCCATGTGAACAAAGAAATAGAGTTAGAATATCAGATTCTTGAGAAGAATATCCTGCGCACGCAGACGCTGTTGTGTGATATGTTGATGCGAGATGCACCCTTAGGTATTGTATCACAAAGCCCTAATATAATGGATCTAGTGAAATGTGATGGGGCTGCACTCTTTTATAGAAACAAGTTATGGTTATTAGGAGCGACACCGACTGAATCTCAATTAAGAGAGATAGCTTTATGGATGTCTGAGTATCATACAGATTCAACAGGTTTGAGTACAGACAGCTTATCGGATGCAGGGTTTCCAGGGGCTCTTTCTCTTAGTGATACTGTATGTGGAATGGCAGCTGTTAGAATAACTTCAAAAGACATAGTTTTCTGGTTTAGGTCGCACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAACCGGGCGACCAAGACGATGGTAGGAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAAGCCAGAAGCGTGCCGTGGAAAGACTTTGAAATGGATGCTATTCATTCGTTGCAGTTAATACTGAGAAATGCGTCCAAAGATACAGATATTATAGATTTGAATACGAAGGCAATCAATACAAGACTAAATGATTTGAAGATTGAAGGGATGCAGGAATTGGAAGCAGTGACAAGTGAGATGGTTAGATTAATTGAAACAGCAACAGTGCCTATTTTGGCAGTGGATGTTGATGGGACGGTCAACGGATGGAATATAAAAATCGCCGAGTTGACAGGTCTTCCGGTTGGCGAAGCTATTGGAAAACATCTACTCACCCTGGTTGAGGATTCTTCAACTGATATAGTCAAGAAGATGCTCAACTTGGCACTGCAGGGTATGCCTTTTTTCCTTTTCCATCTTATTATCCTTTACTTAAGACTCTAA 2106 0.4425 MSTTRPSQSSNNSGRSRNSARIIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGDQQPRSNKVTTAYLNHIQRGKQIQPFGCLLALDEKTCKVVAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTVFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLASGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALFYRNKLWLLGATPTESQLREIALWMSEYHTDSTGLSTDSLSDAGFPGALSLSDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGDQDDGRKMHPRSSFKAFLEVVKARSVPWKDFEMDAIHSLQLILRNASKDTDIIDLNTKAINTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGTVNGWNIKIAELTGLPVGEAIGKHLLTLVEDSSTDIVKKMLNLALQGMPFFLFHLIILYLRL* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3595 701 SMART gaf_1 218 411 IPR003018 GO:0005515
Psa6g3595 701 Gene3D - 199 562 IPR029016 -
Psa6g3595 701 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Psa6g3595 701 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Psa6g3595 701 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Psa6g3595 701 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Psa6g3595 701 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Psa6g3595 701 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Psa6g3595 701 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Psa6g3595 701 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Psa6g3595 701 SUPERFAMILY GAF domain-like 409 585 - -
Psa6g3595 701 Pfam PAS fold 69 185 IPR013654 GO:0006355
Psa6g3595 701 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Psa6g3595 701 Pfam GAF domain 218 401 IPR003018 GO:0005515
Psa6g3595 701 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Psa6g3595 701 Pfam PAS fold 620 686 IPR013767 GO:0006355
Psa6g3595 701 Gene3D PAS domain 604 694 - -
Psa6g3595 701 MobiDBLite consensus disorder prediction 1 21 - -
Psa6g3595 701 Pfam Phytochrome region 414 586 IPR013515 GO:0006355|GO:0009584
Psa6g3595 701 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Psa6g3595 701 SUPERFAMILY GAF domain-like 198 398 - -
Psa6g3595 701 Gene3D - 406 579 IPR043150 -
Psa6g3595 701 SMART pas_2 619 685 IPR000014 -
Psa6g3595 701 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 687 IPR035965 -
Psa6g3595 701 Coils Coil 398 418 - -
Psa6g3595 701 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 685 - -
Psa6g3595 701 PANTHER PHYTOCHROME 1 685 - -
Psa6g3595 701 Gene3D PAS domain 73 321 - -
Psa6g3595 701 TIGRFAM sensory_box: PAS domain S-box protein 624 686 IPR000014 -
Psa6g3595 701 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Psa6g3595 701 CDD PAS 628 697 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3595 Psa-Chr6 303804438 303808695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3595 1 686 Histidine Kinase Gene Family AT1G09570 83.697 0.0 1201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3595 K12120 - gmx:100790763 1194.87