Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2512 ATGTGTGTTATATTGTGTTCTTGGAATCTTTTTGCAGGATCAATGAAGTCTTGGTCTCTGGATGAAAACATAGACGCGAAAGGGTTTGATGATCTTGAGAAACCGCTGTTGGAGACTCGAGAAGATGATACACCTGGTCGACTTGGTCTGCTTACACCTCAAATAAATGATATCAAGAGTTTTGATTCTAAAATTAAGAGAAGCCTTAAGACCATCATGGTTTCGCCACTTCACGCGAATTTGATTAATGCAAATGAAATAGAAGAAACTAGAATTGAAGTAAATGAGCTGAAGGGAGAAGAAATATCGGAATGCCGAATCAAGATCAAGGGAATGACATGCACAAGCTGTTCTCAATCTGTTGAGCATGCCTTGCAAATGGTTGAAGGAGTGAAAAAGGCGATAGTTGGTCTAGCGTTAGATGAAGCAAAAGTACTCTTTGATCATATATTCGTTGATACCAACAAAATAATTGAAGCTGTAGAAGATGCTGGTTTTGGAGCAGAACTTGTTAGTTCAAGGAACGATATGAACAAAGTGCATCTAAAACTTGAAGGTCCAAGATTTCTTATACAGTGTGTTCATGAAGCTAGTAGTGGTCATAGTGTGTATCAAGCAACTTTGCATACTAATTCGGGAAATAGAGCAAGCGAGAAGTTGAATGAAATTCGCATGTACAGAAACCAAGTTTTGTTAAGCTGCTTATTTTCTGTTCCTGTGTTTATGTTTTCCATGATTCTTCCTATGCTTCCTCCATACGGTATCTGGTTAAACTATAAGATCCATAACATGTTCACTCTAGGATTGTTTTTGAGATGGATCCTCAGCAGTCCTGTTCAGTTCATTGTTGGCAAAAGGTTTTATTTAGGCGCATATCATTCACTAAGGAGATGGTCTGCGAACATGGATGTGCTGGTAGCACTCGGAACTAATGCTGCTTATTTCTACTCAGTATATGTTGTAATTAAAACGCTAACTTCGGCTACATTTCAAGGACAAGATTTCTTTGAGACCAGTTCTATGTTGATATCATTTATTCTATTAGGCAAATATTTGGAGATTATGGCGAAAGGGAAAACATCAGCTGCTTTAGAAAAGCTTGTGCAACTCGTTCCTGATAAAGCTTATTTGCTAGATTTTGATACTAATGGAAATGTGGTTGGAGAGACAGAAATCGACACTGAACTTATACAAAAGAATGACATGATCAAGATTGTTCCCGGTGCTAAAATTCCAGCTGATGGTATTGTTATAAAAGGGAAAAGTTGTGTGGATGAAAGTATGATCACAGGTGAATCAAGGCCTGTTAATAAAGTTCCAGGAGATAAGGTTATCAGTGGCACCATCAATGAGAATGGTTGCTTACTGGTCAAGGCAACTCATGTTGGATCTGAGACGGCGCTTTCTCAAATTGTTCAACTTGTAGAAGCTGCTCAACTTGCAAGAGCACCAGTTCAGAAACTTGCAGATGATATTTCAAGGGTTTTTGTTCCAATAGTTGTTGCTGCAGCCTTCATAACTTGGCTTGGATGGTTTATTCCTGGAGAAGCGGGTTTATACCCTAAAAATTGGATTCCAAAAGCTATGGATTCATTTGAATTTGCTTTGCAGTTCGCTATTTCTGTACTGGTTGTTGCTTGTCCATGTGCTCTCGGTCTAGCTACACCAACCGCAATCATGGTTGCTTCAGGTGTTGGTGCTTCTCAAGGTGTGCTCATCAAAGGTGGAGATGCAGTGGAAAAAGCACACAAGGTGAAAATTGTTGTGTTTGATAAAACTGGGACATTGACAATCGGAAAACCAGTGGTGGTTAGGGTAGTGCTGTTTTCTAAATTTTCTATGGAGGAGTTATGTGACATGACTATTTCTGTGGAGGCAAATAGTGAACATCCAATTGCAAAAGCTGTTGTTGCATATGCAAAGAGACGGCGCAAGAGTTTCGGATCCTCTAGCAAAGATCAAGTACTAGATGTGAATGACTTTGAAGTACACGTGGGAAGTGGGGTAAGTGGAAAAGTTAAGGAAAAAACAGTTCTAGTTGGAAACAAGAGACTCATGCATGCTTTTGATATACCAATAAGTTCCACGGTGGAGACGTACTTATCCGAGAACGAAACTCTTGCCAGAACTTGTGTATTGGTTTCAATTGAAGGAAAAATTGTTGGAGCATTCTCTGTAACTGACCCAGTAAAGCCAGAAGCAAAGAGTGTCGTATCGTTTCTTCACTCCATGGACATCTCAACCATCATAGTTACTGGTGATAATTGGGCTACTGCAAATGCAATTGCAAATGAAGTTGGTATTAGTGAGGTTTTTGCTGAGATAGATCCTCTTGGAAAAGCTGATATAGTCAAGGACTTGCAGATGAAAGGAATGATGGTAGCAATGGTAGGTGATGGAATAAACGACTCGCCGGCTTTAGCAGCTGCTGATGTTGGTATGGCAATTGGTGCTGGAACAGACATAGCAATAGAAGCAGCTGATGTGGTTCTTGTCAAAAGCAACTTAGAAGATGTGATTACAGCAATAGATTTGTCAAGAAAAACCATATCTCGGATCTGGCTCAACTATATATGGGCTTTTGGGTACAACATTCTTGGTATGCCAATTGCAGCTGGTGTTTTGTACCCTTTTTTTGGAATCAGGTTGCCTCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCATCACTTAGTGTGGTTTCTTCATCACTCTTGTTGATGTTTTATAAAAAGCCTTTGAAGATGGATTATGGTTTGTCTAGTGTTTAA 2769 0.3973 MCVILCSWNLFAGSMKSWSLDENIDAKGFDDLEKPLLETREDDTPGRLGLLTPQINDIKSFDSKIKRSLKTIMVSPLHANLINANEIEETRIEVNELKGEEISECRIKIKGMTCTSCSQSVEHALQMVEGVKKAIVGLALDEAKVLFDHIFVDTNKIIEAVEDAGFGAELVSSRNDMNKVHLKLEGPRFLIQCVHEASSGHSVYQATLHTNSGNRASEKLNEIRMYRNQVLLSCLFSVPVFMFSMILPMLPPYGIWLNYKIHNMFTLGLFLRWILSSPVQFIVGKRFYLGAYHSLRRWSANMDVLVALGTNAAYFYSVYVVIKTLTSATFQGQDFFETSSMLISFILLGKYLEIMAKGKTSAALEKLVQLVPDKAYLLDFDTNGNVVGETEIDTELIQKNDMIKIVPGAKIPADGIVIKGKSCVDESMITGESRPVNKVPGDKVISGTINENGCLLVKATHVGSETALSQIVQLVEAAQLARAPVQKLADDISRVFVPIVVAAAFITWLGWFIPGEAGLYPKNWIPKAMDSFEFALQFAISVLVVACPCALGLATPTAIMVASGVGASQGVLIKGGDAVEKAHKVKIVVFDKTGTLTIGKPVVVRVVLFSKFSMEELCDMTISVEANSEHPIAKAVVAYAKRRRKSFGSSSKDQVLDVNDFEVHVGSGVSGKVKEKTVLVGNKRLMHAFDIPISSTVETYLSENETLARTCVLVSIEGKIVGAFSVTDPVKPEAKSVVSFLHSMDISTIIVTGDNWATANAIANEVGISEVFAEIDPLGKADIVKDLQMKGMMVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADVVLVKSNLEDVITAIDLSRKTISRIWLNYIWAFGYNILGMPIAAGVLYPFFGIRLPPWLAGACMAASSLSVVSSSLLLMFYKKPLKMDYGLSSV* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2512 922 SFLD p-type atpase 571 849 IPR044492 -
Psa1g2512 922 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 302 906 IPR027256 GO:0006812|GO:0016021|GO:0019829
Psa1g2512 922 Pfam Heavy-metal-associated domain 107 166 IPR006121 GO:0046872
Psa1g2512 922 PANTHER ATP7, ISOFORM B 84 186 - -
Psa1g2512 922 PANTHER ATP7, ISOFORM B 185 916 - -
Psa1g2512 922 Gene3D - 102 175 - -
Psa1g2512 922 SUPERFAMILY Calcium ATPase, transduction domain A 389 475 IPR008250 -
Psa1g2512 922 Gene3D - 357 479 - -
Psa1g2512 922 SUPERFAMILY Calcium ATPase, transmembrane domain M 340 581 IPR023298 -
Psa1g2512 922 CDD HMA 107 169 IPR006121 GO:0046872
Psa1g2512 922 ProSitePatterns Heavy-metal-associated domain. 109 138 IPR017969 GO:0046872
Psa1g2512 922 ProSitePatterns E1-E2 ATPases phosphorylation site. 591 597 IPR018303 -
Psa1g2512 922 SFLD Haloacid Dehalogenase 571 849 - -
Psa1g2512 922 Gene3D - 596 676 IPR023299 GO:0000166
Psa1g2512 922 Gene3D - 677 728 IPR023299 GO:0000166
Psa1g2512 922 CDD P-type_ATPase_Cu-like 230 893 - -
Psa1g2512 922 Pfam haloacid dehalogenase-like hydrolase 585 811 - -
Psa1g2512 922 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Psa1g2512 922 PRINTS P-type cation-transporting ATPase superfamily signature 589 603 - -
Psa1g2512 922 PRINTS P-type cation-transporting ATPase superfamily signature 722 733 - -
Psa1g2512 922 PRINTS P-type cation-transporting ATPase superfamily signature 744 754 - -
Psa1g2512 922 PRINTS P-type cation-transporting ATPase superfamily signature 797 816 - -
Psa1g2512 922 PRINTS P-type cation-transporting ATPase superfamily signature 820 832 - -
Psa1g2512 922 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 185 916 - -
Psa1g2512 922 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 84 186 - -
Psa1g2512 922 Pfam E1-E2 ATPase 388 567 - -
Psa1g2512 922 Gene3D - 556 853 IPR023214 -
Psa1g2512 922 ProSiteProfiles Heavy-metal-associated domain profile. 104 170 IPR006121 GO:0046872
Psa1g2512 922 SUPERFAMILY HAD-like 587 903 IPR036412 -
Psa1g2512 922 PRINTS Copper-transporting ATPase 1 signature 104 129 - -
Psa1g2512 922 PRINTS Copper-transporting ATPase 1 signature 130 153 - -
Psa1g2512 922 PRINTS Copper-transporting ATPase 1 signature 159 179 - -
Psa1g2512 922 SUPERFAMILY HMA, heavy metal-associated domain 100 173 IPR036163 GO:0046872
Psa1g2512 922 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 342 874 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2512 Psa-Chr1 211652560 211656798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2512 95 917 Primary Pumps ATPases AT1G63440 55.363 0.0 948
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2512 K17686 - gmx:100793894 1266.91