Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2556 ATGGAGGGCTCTGGAAAGCATAGCAACAACAGTAAATTCTTGAACCCGTGGATGCTTCAGTTCCAGAAAATGGGTCTTGAACTCAAGTGCCCTCTCTGTTTAAACTTGTTCAAAAAGCCGATGTTACTTCCATGCAGCCACATATTCTGCTGCTCCTGCTTAGCTGATCGCTCAAGGCGTAGTTCAGTATGTGCTGTCTGTAATAATCATTATGCTCAAAGAGATTTGAGGTCTCTGCCTATTGAAAACATGGTTGCAATATATAGAAGCCTGGATGCTGCCTTTCATGCCAATCTATCTCAGCATCATTCTTCTGATGAGCTGCCAGTTTTGGAGCGGTGTGAAACATTGTTGAATGGGACTTCTAATTATAAAACGTTCAAGGAACCATGCAAAACATCTCTAGGAGATAACCTACATCGGGAGCAGTCAGTATTTTCACAAACAATGGCTGAATGTGTTAAGGGTCCTTTCAGTTTAGACCATTCTATGGAAGTTGATATTGGCAAGAATCACAAATATGAGAAGAGTGGTAATGTGGTGCATGGTAAAGATAAGGATTTTGAGGTTTCTTGCAAGGAAGAGATTCTGATTAAAAGTTCCCAACTGGATGGAAGGGCCCATGAAGATTGTGGGCTTGTTGAAATGGACATAAATCAAGTCACTCAATCTTCACCAGACAGCCCTCCATTTTGTGATACAAAAGGGTCAGACAATGACTGCAGCGACCAGGATAGTGAACATCACATGCCTGTTGAGATATTAGAAAGTTCTTCATCAAAGAGAACAAGCAAAGAAAATGAAATATTGGACAAACGGATCCAGTTGCGGTCTGAAAGCTCTGCCTCTGAAACAGAGGGTATTGTGAGGGACTCCAAGAGGCCTAAAAATGGCAATGATGGCATTCAACCTAATGTAACCCATCAAACCAAACCCATGGCTTCTGAATGTAATATGGACCCTAAATGTGGAATGGACCTGAATTCATGTTCAAATGCAAATGTGTGTTCTTTTTGCCAGTCTTCTAGAACCTCAGAGGTTACTGGGCCAGTGTTGCATTATAAAAATGGAAATTTGTTAACGGGAGTTGCGGCGCTCCAACCAAATGTCATACATGTACATAAACTTTGCATTGAATGGTCACCTCAGGTGTATTTTATTGGTGAAACCGTTAAAAATTTGAAGGCAGAAGTGGCAAGGGGAGCCAAGCTAAAATGCAGCAAATGCGGCCTCAAGGGGGCTGCTCTTGGATGCTATGTTAAATCCTGTAGGAAAACTTATCATGTTCCTTGTGCAATGGAAATCTCAGCTTGCCGATGGGATGATGAGGAATATCTTATGCTCTGTTCAGCTCATTCTCACGTCAAATTTCCATGTGAGAAATCCAGTTCTGAGAAACAGGGCTCCCAAAAGAAGCATCCTGCGTCATCAAATTTGACACCTAAGCTGTCAAAGCCCCCAGTAGTTTTGTCAGATGATAGTAAACATTTGGTTTTCTGTGGATCTGCTCTGTCTACAGATGAAAAGATACGTTTGATCAATTTTGCAAGTAGGATCGGTGCAACTGTTACCAAGTTTTGGACGCCAGATGTGACACACGTGATTGCAGCAACTGATTCAAATGGAGCGTGTGCCAGGACACTTAAAGTTCTTATGGGCATTTTAAATGGCCAGTGGATCCTTAAAATGGACTGGGTTACTGCAAGCATGGAGATGGCGTGTCCAGTGGAGGAAGAGCCATATGAAATATGTCTTGATAACCATGGGTGTCAAGGTGGCGCAAAAGCTGGCAGGCTTAGGGCATTGGCCAGTGCGCCCAAGCTATTTTGCGGCTTTAGAATGTACTTTTCTGGAGATTACATGTCAGATTATAAGGAGGATCTTGTAGACTTGGTTGTGGCAGGAGGAGGTACTGTTTTGGAGAGCAAGGAAGAATTGCAAACAGAAGCTCATGAAGGCAAGGAGACCTCAAAGCTGATTGTTTACAATCTTGATCCCCCACAAGGAAGTAGGTTGGGGGACGAAGTTACAATTCTTTGGGAGAGGTTAAACGAGGCAGAGGATTTAGCTGCTGCCACTGGTTCACAAGTCGTTGGTCACACGTGGATTTTGGAGTCAATTGCTGCATGCAAGTTACAGCCTTTTATTAGTTAG 2154 0.4299 MEGSGKHSNNSKFLNPWMLQFQKMGLELKCPLCLNLFKKPMLLPCSHIFCCSCLADRSRRSSVCAVCNNHYAQRDLRSLPIENMVAIYRSLDAAFHANLSQHHSSDELPVLERCETLLNGTSNYKTFKEPCKTSLGDNLHREQSVFSQTMAECVKGPFSLDHSMEVDIGKNHKYEKSGNVVHGKDKDFEVSCKEEILIKSSQLDGRAHEDCGLVEMDINQVTQSSPDSPPFCDTKGSDNDCSDQDSEHHMPVEILESSSSKRTSKENEILDKRIQLRSESSASETEGIVRDSKRPKNGNDGIQPNVTHQTKPMASECNMDPKCGMDLNSCSNANVCSFCQSSRTSEVTGPVLHYKNGNLLTGVAALQPNVIHVHKLCIEWSPQVYFIGETVKNLKAEVARGAKLKCSKCGLKGAALGCYVKSCRKTYHVPCAMEISACRWDDEEYLMLCSAHSHVKFPCEKSSSEKQGSQKKHPASSNLTPKLSKPPVVLSDDSKHLVFCGSALSTDEKIRLINFASRIGATVTKFWTPDVTHVIAATDSNGACARTLKVLMGILNGQWILKMDWVTASMEMACPVEEEPYEICLDNHGCQGGAKAGRLRALASAPKLFCGFRMYFSGDYMSDYKEDLVDLVVAGGGTVLESKEELQTEAHEGKETSKLIVYNLDPPQGSRLGDEVTILWERLNEAEDLAAATGSQVVGHTWILESIAACKLQPFIS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2556 717 MobiDBLite consensus disorder prediction 469 484 - -
Prci1g2556 717 SUPERFAMILY BRCT domain 608 715 IPR036420 -
Prci1g2556 717 ProSiteProfiles Zinc finger RING-type profile. 30 68 IPR001841 -
Prci1g2556 717 Gene3D BRCT domain 494 600 IPR036420 -
Prci1g2556 717 MobiDBLite consensus disorder prediction 298 313 - -
Prci1g2556 717 MobiDBLite consensus disorder prediction 238 297 - -
Prci1g2556 717 ProSiteProfiles BRCT domain profile. 497 583 IPR001357 -
Prci1g2556 717 CDD BRCT_Bard1_rpt1 497 576 - -
Prci1g2556 717 Pfam PHD-like zinc-binding domain 374 453 - -
Prci1g2556 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 455 IPR013083 -
Prci1g2556 717 SMART BRCT_7 606 710 IPR001357 -
Prci1g2556 717 SMART BRCT_7 491 573 IPR001357 -
Prci1g2556 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 101 IPR013083 -
Prci1g2556 717 SUPERFAMILY RING/U-box 22 78 - -
Prci1g2556 717 SMART ring_2 30 67 IPR001841 -
Prci1g2556 717 SUPERFAMILY BRCT domain 497 583 IPR036420 -
Prci1g2556 717 Gene3D BRCT domain 605 710 IPR036420 -
Prci1g2556 717 MobiDBLite consensus disorder prediction 222 313 - -
Prci1g2556 717 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 11 288 IPR031099 GO:0006281|GO:0006974
Prci1g2556 717 Pfam BRCA1 C Terminus (BRCT) domain 497 569 IPR001357 -
Prci1g2556 717 MobiDBLite consensus disorder prediction 222 237 - -
Prci1g2556 717 FunFam Breast cancer type 1 susceptibility protein homolog 494 600 - -
Prci1g2556 717 Pfam RING-type zinc-finger 30 61 IPR027370 -
Prci1g2556 717 ProSiteProfiles BRCT domain profile. 604 717 IPR001357 -
Prci1g2556 717 MobiDBLite consensus disorder prediction 462 484 - -
Prci1g2556 717 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Prci1g2556 717 ProSiteProfiles Extended PHD (ePHD) domain profile. 333 453 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2556 Prci-Chr1 45318814 45324636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2556 1 166 RAD5 or RAD16-like Gene Family AT5G22750 26.257 1.73e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2556 K10683 - gmx:100784883 818.92