Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci13g1936 | ATGAGTTATTGGTCACTATCATCTGTTCTTAATAATCAGCCTATGCCATTGTCTGCTGCAAGCACCAAATCTTCTGTTCATATCGAAAGCAGCGCCTGTTTTATAAGTAGTCTGAGCCAACGAAGGTGCTGTCTCTCTGTTGCTGAAGACTATTGTAAAATCAGGAGACTCAGGATTTCTGGGGTAATTAAATATAGACAAGGATTGTCACATTTGCAGGTCCAACAAGGAACTTGGGAAGAACCTGATGATGGCAGTGGGAGTGAGTATGATGATGACGAAGAAGATGAGCAAACAGAAGATGAGAACTATGGCTTTGAAAGTGATTGGGAAGAGGAAGGGATTACAACATCAGCCATTAATGATATTAAAAAAGAGGTTGAACAGCTTTTGGAGCCAGAAGAAAGAGCAGTCTTGCAACAGAATGTGACTCCTAACTTGAGAAAAATCTCAACTGAAAAATGGAGCCCTCTGCACACTTTAGCACTATCCACACAGATAAGATGCATGGATCAACTTCTTGAAAGTGGGGTTGATATTGATCTTAAGAACAAGGAAGGTCTGACCGCACTTCATACAGCTATTATAGGAAAGAAAGAAGCTGTAATAAGCCATCTTTTACGGAAAGGTGCAAGTCCCCATGTCAAGGATAAGGATGGTGCTACCCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGCAAACTGTAAAGCTATTGATCAAATATAAAGTTGATGTCAATGTTGCAGATCATGAAGGTTGGACTCCATTGCACGTTGCTATTCAGAGCAGAAATAGAGATATTGCAAAAATTTTGTTAGTCAATGGTGCAGATAAGACCAGAAGAAATAAGGATGGGAAAACAGCATTGGATCTGAGTTTATGTTATGGGAAGAATTTCAAGTCTTATGATCTTGGCAAATTACTGAAGGTAGTTCCAGCTGACAGTGATTTTTGA | 957 | 0.3981 | MSYWSLSSVLNNQPMPLSAASTKSSVHIESSACFISSLSQRRCCLSVAEDYCKIRRLRISGVIKYRQGLSHLQVQQGTWEEPDDGSGSEYDDDEEDEQTEDENYGFESDWEEEGITTSAINDIKKEVEQLLEPEERAVLQQNVTPNLRKISTEKWSPLHTLALSTQIRCMDQLLESGVDIDLKNKEGLTALHTAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKYKVDVNVADHEGWTPLHVAIQSRNRDIAKILLVNGADKTRRNKDGKTALDLSLCYGKNFKSYDLGKLLKVVPADSDF | 318 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci13g1936 | 318 | Gene3D | - | 220 | 299 | IPR036770 | - | |
| Prci13g1936 | 318 | Gene3D | - | 109 | 219 | IPR036770 | - | |
| Prci13g1936 | 318 | ProSiteProfiles | Ankyrin repeat region circular profile. | 186 | 218 | - | - | |
| Prci13g1936 | 318 | ProSiteProfiles | Ankyrin repeat region circular profile. | 252 | 278 | - | - | |
| Prci13g1936 | 318 | MobiDBLite | consensus disorder prediction | 84 | 109 | - | - | |
| Prci13g1936 | 318 | SUPERFAMILY | Ankyrin repeat | 145 | 297 | IPR036770 | - | |
| Prci13g1936 | 318 | ProSiteProfiles | Ankyrin repeat region circular profile. | 219 | 250 | - | - | |
| Prci13g1936 | 318 | ProSiteProfiles | Ankyrin repeat profile. | 252 | 284 | IPR002110 | GO:0005515 | |
| Prci13g1936 | 318 | ProSiteProfiles | Ankyrin repeat profile. | 186 | 218 | IPR002110 | GO:0005515 | |
| Prci13g1936 | 318 | SMART | ANK_2a | 219 | 248 | IPR002110 | GO:0005515 | |
| Prci13g1936 | 318 | SMART | ANK_2a | 252 | 281 | IPR002110 | GO:0005515 | |
| Prci13g1936 | 318 | SMART | ANK_2a | 186 | 215 | IPR002110 | GO:0005515 | |
| Prci13g1936 | 318 | SMART | ANK_2a | 153 | 182 | IPR002110 | GO:0005515 | |
| Prci13g1936 | 318 | ProSiteProfiles | Ankyrin repeat profile. | 153 | 185 | IPR002110 | GO:0005515 | |
| Prci13g1936 | 318 | Pfam | Ankyrin repeats (many copies) | 155 | 201 | IPR002110 | GO:0005515 | |
| Prci13g1936 | 318 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 109 | 310 | - | - | |
| Prci13g1936 | 318 | Pfam | Ankyrin repeats (3 copies) | 202 | 283 | IPR002110 | GO:0005515 | |
| Prci13g1936 | 318 | ProSiteProfiles | Ankyrin repeat profile. | 219 | 251 | IPR002110 | GO:0005515 | |
| Prci13g1936 | 318 | MobiDBLite | consensus disorder prediction | 74 | 109 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci13g1936 | Prci-Chr13 | 34341756 | 34346668 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci13g1936 | 138 | 278 | Ion Channels | AT2G25600 | 31.206 | 1.59e-09 | 57.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci13g1936 | - | - | gmx:100818556 | 392.119 |