Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5957g00004 ATGGATCAGCTGTCTTGGGAGGCTTTCCTCTCTGAGCTCGACATGGAGAACGAATTTGATATAAGAGGAACGAATTCGGATCAGGATGATGAAGGACAATGTTTTCTCAGAGATATCCTGCAGGACCCGAATAATTTATTATCTTCAGATAGTGAAACGATTCTGCCTCCGACCCCTGTGCCCGACGGCGGGGCCACCACCGGCAACTCAGCCAACTCCAGTTTCGTCGTCAACTCTCAACAATCTGCTTCCGAAACAACACCCCGAACCGCTTGCGTTCTGTCTTTCGATCAATCCGTTGTGATTCCCGATATCCCAGACCCCAGTTATAATCATTCGCTCCAGAGAAAAGATGTTAGCAGTTATTCCTTGGAGCCCAAACGGACCGTTGAAATGCTTGACTATGAACCAGCGATGAACAGAGGCAAAAAGAAGGCCAGAAGCGGTGCTGGGGCCATGGATCACATACTGGCTGAGAGAAGAAGGAGACAGGAACTCACAGAAAAGTTCATAGCACTTTCGGCCACCATCCCCGGCTTGAAAAAGATTGACAAGGCGTCTATACTGAGCGAAGCTATAAGTTACGTGAAGCGGCTTCAAGAACGTGTGAAAGAACTTGAGAAAGAGGCGAACAAGATAACGTCTGCAGATGATGACAATGATGATATTGACAGAGCAGGCACGCCGGCGTCGAGTGAAGTGAACTCCGGCGACAGGTACACACCCAACAACGACGTACTCCCCGATGTCAAAGCAAGAATGTCCGACGACAAACAAGCGCTCATCAGAATCCTCTGCAAGAAACAGGACTGTGCAATGCTTAGAATGCTTGATGAGCTCAAAAATCTTAATCTCAGTGTCATTCCATTTGGCTCCTCTACTCTTGATGTTACCATTATTGCTCAGTATGCCTAA 915 0.4776 MDQLSWEAFLSELDMENEFDIRGTNSDQDDEGQCFLRDILQDPNNLLSSDSETILPPTPVPDGGATTGNSANSSFVVNSQQSASETTPRTACVLSFDQSVVIPDIPDPSYNHSLQRKDVSSYSLEPKRTVEMLDYEPAMNRGKKKARSGAGAMDHILAERRRRQELTEKFIALSATIPGLKKIDKASILSEAISYVKRLQERVKELEKEANKITSADDDNDDIDRAGTPASSEVNSGDRYTPNNDVLPDVKARMSDDKQALIRILCKKQDCAMLRMLDELKNLNLSVIPFGSSTLDVTIIAQYA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5957g00004 304 Coils Coil 189 216 - -
Pral5957g00004 304 SMART finulus 156 205 IPR011598 GO:0046983
Pral5957g00004 304 MobiDBLite consensus disorder prediction 210 247 - -
Pral5957g00004 304 MobiDBLite consensus disorder prediction 210 226 - -
Pral5957g00004 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Pral5957g00004 304 MobiDBLite consensus disorder prediction 63 82 - -
Pral5957g00004 304 Pfam Helix-loop-helix DNA-binding domain 155 200 IPR011598 GO:0046983
Pral5957g00004 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 211 IPR036638 GO:0046983
Pral5957g00004 304 PANTHER BHLH TRANSCRIPTION FACTOR 53 302 - -
Pral5957g00004 304 Gene3D - 151 221 IPR036638 GO:0046983
Pral5957g00004 304 MobiDBLite consensus disorder prediction 46 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5957g00004 Pral-Chr5957 35002 37400 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5957g00004 141 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.798 4.39e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5957g00004 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5957g00004 - - aprc:113856039 178.718