Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5803g00001 ATGTTCAACTCCTGCTACAATTCATACGGCCAGAGGGATAAATTTGTGAGGTTGGATGATCTTGATTCTAACACTTCAGTACAATCCAGCCCAAGTGGAATCATGAAGAAGCTCAGATTTAATATAGAGGGCAAGCCCATTTCTGGTCGTGAAAATAAGAATGCATCAAAATCCTTTAGGATGGGAATGAAGAGAGGATCAGATGGACTAAAGACATTTGGAAGATCACTGAAAAGTGGAGTCACCTGGCAAGTTTTCCCAGAAGATCTTAAAGTATCAGAGACTAAAATATTTGATCCTCAAGATAAGACCCTTTTGTTGTGGAACAAGTTTTTTGAGCTTCTATGTATTATTTCTGTGTCATGTGATCCTCTCTTCTTTTATCTTCCCTACTTCAACCTCAGATCTCACTGCCTTGCCATTGATACTGCTCTTGCATCTACTGCTATTATTCTGAGATCGGTACTTGATGCTATCTATCTCATCCGCATGGGTTTCCAATTCCGGACTGCTTATATTGCACCATCCTCTCGGGTTTTTGGACGAGGTGAACTTGTCATTGATCCTAAAAAGATTGCCAAGAGATACCTTGGGCGTTACTTCATTGTTGATTTCAGTTCTGTGCTGCCATTGCCACAGATTGTGGTGGCCAACTATCTTCAAAAAGCAAAAAGTTTAGAGGTGTTAGCCACAAAAACGACGCTATTGAGAGTGGTCATCCTCCAATATATTCCGAGATTTGCACGCTTTATCCCTTTAGCTACTGAAGTTAAAAAGACAGCTGCTGTCTTCTCTGATAATGCACTCGTGGGTGCCACCTACTATTTGGTTTGGTACATGCTTGTTAGCCATATAGTAGGGTCTGTGTGGTACTTACTAGCTATCGAACGAAATGACACGTGTTGGCAGAAGGCTTGTGCTGCTGCTGTTACTCAAGGATGTATTCCACATTTCTTATACTGTGAGAGTTCAAATAGGCGCCATCCTGGATATGAAGCCTGGAAAAATGTGAATGGGGATATTCTTGACAGGAATTGTGGAGCTGGGGGTGAGGACCCACCATTTGATTATGGAATCTACACTCGTGTGATAGAGAAGGGTATTACTGCCTCCAGTGATATGTGGAGTAAATTCTTTCTATGTTTCTGGTGGGGCCTTCAAAACGTCAGCACACTTGGGCAGGGGCTTGACACGAGTACTTACATCGGGGAGGCTTTGTTTTCCATATTTATATGTATTTTGGGGCTTGTCCTTATGGCTCTTCTGATTGGAAAAGTGCAGAACTACCTTCAATCAATCACTGTTCGTCTTGAGGAAATGAGGATCAAAAGGCGTGATTCTGAGCAGTGGATGCATCACCGTGTGCTTCCTCAAGAGCTAAGGGAAAGAGTGAGACGCTATGATCAATACAAATGGATGGAAACTCGAGGAGTCGACGAAGAGAACTTGGTGCAGAATCTTCCAAAAGATCTAAGGAGGGATATCAAACGCCATCTTTGTTTGAACTTGGTTAGAAGGGTTCCTCTCTTCGCTAATATGGACGAACGCTTACTGGATGCAATTTGTGAGCGTTTAAAACCAAGTTTATACACAGAGGGAACATACATTGTTAGGGAAGGAGATCCAGTAGTTGAGATGTTCTTCATCATACGTGGTCGTTTAGAGAGTGTGACCACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGTCTTCTCAAAGAAGGTGATTTCTGTGGAGAAGAGCTTCTGACATGGGCATTAGACCCTAAATCTGCAGCAAACTTGCCATCATCTACAAGAACAGTGAAAGCTATCAATGAAGTAGAGGCATTTGCTTTGGAAGCAGAGATGTTAAAGTTTGTGGCTTCACAGTTCAGGCGCCTCCATAGCAGACAAGTTCAACAGACCTTCCGTTTCTACTCACAGCAATGGAGAACATGGGCAGCAACTTTCATCCAGGCTGCATGGCGACGGTATATGAAAAGGAAGATGATGGAGTCACAACTAATAGAGGAGGAGGAGGAGGAGATGGAGGATGAGGATGAAGACTATGGCTCAGATGACGATGGAAAAGCTTTGATTTCAAGAACTGAAAGTTCATCCAGGGCTGGATTTGGTTCAACCATTTATGCTTCTCGCTTTGCTGCTAAAGCCCTTCGTGGTCGTAAGCTTCGTTCTCTCCAAAAGCCTCCAGAACCTGACTTCAGTGTTTATGATCATAGACATTGA 2229 0.4302 MFNSCYNSYGQRDKFVRLDDLDSNTSVQSSPSGIMKKLRFNIEGKPISGRENKNASKSFRMGMKRGSDGLKTFGRSLKSGVTWQVFPEDLKVSETKIFDPQDKTLLLWNKFFELLCIISVSCDPLFFYLPYFNLRSHCLAIDTALASTAIILRSVLDAIYLIRMGFQFRTAYIAPSSRVFGRGELVIDPKKIAKRYLGRYFIVDFSSVLPLPQIVVANYLQKAKSLEVLATKTTLLRVVILQYIPRFARFIPLATEVKKTAAVFSDNALVGATYYLVWYMLVSHIVGSVWYLLAIERNDTCWQKACAAAVTQGCIPHFLYCESSNRRHPGYEAWKNVNGDILDRNCGAGGEDPPFDYGIYTRVIEKGITASSDMWSKFFLCFWWGLQNVSTLGQGLDTSTYIGEALFSIFICILGLVLMALLIGKVQNYLQSITVRLEEMRIKRRDSEQWMHHRVLPQELRERVRRYDQYKWMETRGVDEENLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVVEMFFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEMLKFVASQFRRLHSRQVQQTFRFYSQQWRTWAATFIQAAWRRYMKRKMMESQLIEEEEEEMEDEDEDYGSDDDGKALISRTESSSRAGFGSTIYASRFAAKALRGRKLRSLQKPPEPDFSVYDHRH 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5803g00001 742 ProSiteProfiles IQ motif profile. 645 674 IPR000048 GO:0005515
Pral5803g00001 742 MobiDBLite consensus disorder prediction 670 687 - -
Pral5803g00001 742 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 88 735 - -
Pral5803g00001 742 SUPERFAMILY cAMP-binding domain-like 439 629 IPR018490 -
Pral5803g00001 742 Pfam Ion transport protein 107 436 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral5803g00001 742 ProSiteProfiles cAMP/cGMP binding motif profile. 509 592 IPR000595 -
Pral5803g00001 742 MobiDBLite consensus disorder prediction 670 701 - -
Pral5803g00001 742 FunFam Cyclic nucleotide-gated ion channel 1 436 500 - -
Pral5803g00001 742 SMART cnmp_10 509 640 IPR000595 -
Pral5803g00001 742 FunFam Cyclic nucleotide-gated ion channel 1 507 625 - -
Pral5803g00001 742 Pfam Cyclic nucleotide-binding domain 530 618 IPR000595 -
Pral5803g00001 742 Gene3D Jelly Rolls 507 627 IPR014710 -
Pral5803g00001 742 Coils Coil 660 683 - -
Pral5803g00001 742 MobiDBLite consensus disorder prediction 725 742 - -
Pral5803g00001 742 MobiDBLite consensus disorder prediction 722 742 - -
Pral5803g00001 742 CDD CAP_ED 509 640 IPR000595 -
Pral5803g00001 742 Gene3D Helix hairpin bin 436 500 - -
Pral5803g00001 742 SUPERFAMILY Voltage-gated potassium channels 100 431 - -
Pral5803g00001 742 Gene3D - 114 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5803g00001 Pral-Chr5803 6373 10963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5803g00001 1 735 Ion Channels AT1G15990 66.222 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5803g00001 K05391 - gmx:100810453 1055.82