Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5719g00021 ATGTCTCGGCCTCACCCATCACCGTCCGATCAGACCCAAAAGGAAGAAACCTCACCTTCTACCTTTTCGCATCTTATCAGCACCAGTGATACTAAAACCTTCTCCGTCCCAATCTCACATGGTCAAGTAAGCACCTCTTCTGGGTTTGGGTTGATCCAGAAGCTGGATCGATCCCAGCCTCCACATCAAAATCAAGGTAACAATGTAAGAAAAAGGAACTATAGAGGAGTGAGGCAGAGACCATGGGGGAAGTGGGCAGCCGAAATCCGAGACCCTAAAAAAGCGGCTAGAGTGTGGCTTGGCACCTTCGAGACGGCCGAGGATGCAGCCGCAGCTTATGATGCTGCAGCATTAAGGTTCAAAGGAAGCAAAGCTAAACTTAATTTCCCCGAACGTGTTTCTTTAGCTACTTCTTCAGCCATCCCTTCAGCACAAACCCAGCTTCGTGCTGCTCCTGCTCCGCCGATACAGGAGGCGGCGCAAACTGTGTCTTGGCCTCCGGCGCCATCGACGGACAATGAAGGGTTCCCAAATCTATGGCAGTACGCGCAGCTACTTCGTGGTGGTGATGCCGACCTCCAAAGAGCTGCTTCGGGACTTCATAGTTATCAGAATGATCCGTTTCTTTTTGATTCTTCTACGTTATTCTCGTCATCATCAGGCATGTCTTCTACTTCGTCTGCTTCTATGTCGTCTGGGTCTGATCAACGCCAGGTTCAAGATACGCAGAGAGTAGCACAGGAAGGAGATTATTATGGAGGTTCTTCTTCTCCCGGTTCTTGTTTCCTTGATGAAGGAAACACGAGGAGATAG 813 0.4969 MSRPHPSPSDQTQKEETSPSTFSHLISTSDTKTFSVPISHGQVSTSSGFGLIQKLDRSQPPHQNQGNNVRKRNYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAAAYDAAALRFKGSKAKLNFPERVSLATSSAIPSAQTQLRAAPAPPIQEAAQTVSWPPAPSTDNEGFPNLWQYAQLLRGGDADLQRAASGLHSYQNDPFLFDSSTLFSSSSGMSSTSSASMSSGSDQRQVQDTQRVAQEGDYYGGSSSPGSCFLDEGNTRR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5719g00021 270 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Pral5719g00021 270 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Pral5719g00021 270 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Pral5719g00021 270 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Pral5719g00021 270 CDD AP2 73 131 IPR001471 GO:0003700|GO:0006355
Pral5719g00021 270 MobiDBLite consensus disorder prediction 146 171 - -
Pral5719g00021 270 Pfam AP2 domain 73 122 IPR001471 GO:0003700|GO:0006355
Pral5719g00021 270 MobiDBLite consensus disorder prediction 221 270 - -
Pral5719g00021 270 MobiDBLite consensus disorder prediction 1 75 - -
Pral5719g00021 270 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Pral5719g00021 270 Gene3D AP2/ERF domain 72 132 IPR036955 GO:0003700|GO:0006355
Pral5719g00021 270 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Pral5719g00021 270 PANTHER DNA-BINDING DOMAIN 27 231 IPR044808 GO:0003700|GO:0009873
Pral5719g00021 270 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5719g00021 Pral-Chr5719 109845 111308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5719g00021 60 144 AP2-EREBP Transcription Factor Family AT5G61890 77.647 4.45e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5719g00021 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5719g00021 - - gmx:106797385 177.563