Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5393g00057 ATGGTTCAACAAGAAATGCGAAAAGGTCCATGGACGGAACAGGAGGACATAAAACTGGTGTCCTTTGTGGGCTTGTTTGGAGAACGAAGATGGGATTTTATTGCGAAGGTTTCAGGTTTGCATAGAACTGGTAAGAGTTGCAGGTTACGTTGGGTTAATTACCTTCATCCTGGTCTCAAACGGGGCAAGATGACACCCCAAGAAGAGCGTCTCGTCCTGGAGCTTCACTCTAAGTGGGGAAATAGATGGTCAAGAATTGCTCGCAAATTACCAGGACGCACGGATAATGAGATTAAGAATTACTGGAGGACTCACATGAGGAAGATGGCTCAGGAGAAAAAGCGAGCAGCGGCGGCCGCCTCATCGCCTTCGTCATCATCAGCATCCTCCAAGAGCAGTACCGGAGAAGGAAGCTCTTATGATACAGGAGATCCTACTAATAACGTGATATCTTCCACAGAGATACAGATCACAGGCGAAGACCGAGCCCGTGAAGAAGAAGGGTACTCTATGGATGATATTTGGAAAGATATTGCAGTGTCAGAAGAGAATAAGAGTGAAGACGGCTGCAACTTCTCTTGTACTCCTTCATGGGAGTACTCTACTTCGGATTCGCTATGGGTTATGGACGAAGAGGAAAGTAAGATTTTGAACCCATTTTTTCCCTATTACGAACAAGGGATGCCATTTCTTTAA 696 0.4569 MVQQEMRKGPWTEQEDIKLVSFVGLFGERRWDFIAKVSGLHRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKMAQEKKRAAAAASSPSSSSASSKSSTGEGSSYDTGDPTNNVISSTEIQITGEDRAREEEGYSMDDIWKDIAVSEENKSEDGCNFSCTPSWEYSTSDSLWVMDEEESKILNPFFPYYEQGMPFL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5393g00057 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Pral5393g00057 231 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Pral5393g00057 231 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Pral5393g00057 231 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Pral5393g00057 231 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Pral5393g00057 231 SMART sant 60 108 IPR001005 -
Pral5393g00057 231 SMART sant 7 57 IPR001005 -
Pral5393g00057 231 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 125 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pral5393g00057 231 MobiDBLite consensus disorder prediction 118 157 - -
Pral5393g00057 231 MobiDBLite consensus disorder prediction 112 169 - -
Pral5393g00057 231 CDD SANT 63 106 IPR001005 -
Pral5393g00057 231 FunFam MYB transcription factor 63 132 - -
Pral5393g00057 231 FunFam Myb transcription factor 8 60 - -
Pral5393g00057 231 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Pral5393g00057 231 Gene3D - 63 134 - -
Pral5393g00057 231 CDD SANT 10 55 IPR001005 -
Pral5393g00057 231 Gene3D - 8 60 - -
Pral5393g00057 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5393g00057 Pral-Chr5393 229437 230746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5393g00057 1 216 MYB Transcription Factor Family AT5G59780 60.699 1.15e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5393g00057 Myb_DNA-binding 5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5393g00057 K09422 - qsa:O6P43_028279 303.523