Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5337g00037 ATGACTGCGCCTTCCATCAGATACACCCACCACACTAAACTCGTCTCGCCGGAGGAGCAACACCATCTTTACCGAGGAATGAAGTATCCCAGAGTTGTTAGAATAAGCGTGACAGACGGCGATGCCACGGATTCATCCAGCGATGAAGAAGGAGGGGCTGTCACGCTCCACCGCGGTAGGAGGTTCGTCAACGAGATTACCATCACTCAAAACGATGTCGTTGCTAAGCCTGAGAGCAAGCGTCGCAAGAGTAATAGGAGTGGTAGAGTAATGGGAAGTCGGCGGGCGATGAAAGCGTCGGCGGAGAAGAAGTTCAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATCAGAGATCCTCTGCGACGTGTACGGTTGTGGTTGGGAACGTACGAGACTGCAGAGGAAGCTGCGATGGTGTACGATAAAGCCGCCATTAAGCTGAGAGGAGCAGAGGCACTGACTAATTTCATAACGCCACCGGGGAAGGAGTGCGAGGAGGAGAAGTTGAGCTCCCCGAAATCTGTTCTTCAGTCTCAGAGTGGAAGTTTGTCAGAGGAGGTTGAATCTGTAACAACCAAAGATGATACGATCAGTGAATGTCGGGATGAATCACCGTCGTCGTCATCGTCGGGGTTATCGGAGAATTTCTCAGGGTTGCCGGCGGACATATTCGACTTCGAAACATCGTTGCCGGACATATTTGACGACACTAATATTACAGAAAGCATCTACTCCGATGCGTGGGCCAGTCCCATCGAAAACCTCAACTTGGGTTTCGATTTCGATTCGGGTTTCGGATTCTCAAGTTGGCACAGAGATGACTATTTCCAAGATATCGGCGATTTGTTTGTGACAGATCCGCTTGTTGCTCTCTGA 888 0.5146 MTAPSIRYTHHTKLVSPEEQHHLYRGMKYPRVVRISVTDGDATDSSSDEEGGAVTLHRGRRFVNEITITQNDVVAKPESKRRKSNRSGRVMGSRRAMKASAEKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYETAEEAAMVYDKAAIKLRGAEALTNFITPPGKECEEEKLSSPKSVLQSQSGSLSEEVESVTTKDDTISECRDESPSSSSSGLSENFSGLPADIFDFETSLPDIFDDTNITESIYSDAWASPIENLNLGFDFDSGFGFSSWHRDDYFQDIGDLFVTDPLVAL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5337g00037 295 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Pral5337g00037 295 SUPERFAMILY DNA-binding domain 104 160 IPR016177 GO:0003677
Pral5337g00037 295 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Pral5337g00037 295 MobiDBLite consensus disorder prediction 75 104 - -
Pral5337g00037 295 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Pral5337g00037 295 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Pral5337g00037 295 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Pral5337g00037 295 FunFam Ethylene-responsive transcription factor 2 103 162 - -
Pral5337g00037 295 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 192 - -
Pral5337g00037 295 MobiDBLite consensus disorder prediction 166 218 - -
Pral5337g00037 295 CDD AP2 103 160 IPR001471 GO:0003700|GO:0006355
Pral5337g00037 295 PIRSF PTI6 1 272 IPR017392 GO:0003700
Pral5337g00037 295 MobiDBLite consensus disorder prediction 175 191 - -
Pral5337g00037 295 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5337g00037 Pral-Chr5337 226116 227068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5337g00037 1 295 AP2-EREBP Transcription Factor Family AT4G23750 39.833 2.85e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5337g00037 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5337g00037 - - pcin:129323193 495.352