Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00031 ATGGCCAGCCTAAATTTTCTATGCCATGCTTACCTTATAATGATTTCTTTTGCTGCGTTGTTAACAGCTGAGATTCGAGCAAGCGATGATGCAGGGTCACTCCTTGGAGGCAAGAAGTTGGTGATTGGTGTTCCTAAGAAACCAAGCTTCATCCAGTTTGTGGATGCACAACTGAATCCTTTCAACAAGACTCAGCTCTTGAATGTTACTGGCTATTCAATTGACGTTTTCTTGGCTACAATAGCTTACCTTCGGCGTTCAAATTACAATATTTCCTACGAGTTTAGTGCTTTTGTCGACAAAAGTGGAAAAACTACTGGCGGTTATGATGGATTCCTCTACCAGCTTCACCACGGAAAGTACGATGTTGCAGTGGCGGATTTGTCGATTGTGGCAAACAGGTCGCACTTCGTAGATTTTACGTTGCCATATGCACAGTCTGACGTGAGGATGCTTGTGAAAGTTCGACACGATCCACGCTTGAATATGTGGATTTTTGTACGACCATTTACCTGGGACATGTGGCTATGCATTGTCGTGGTCTGTATTTTCACAGGGGCCGTCATAATATTCATGGAACGCAATGTCCAGAAAGATTCAACACGCCAAAATTCCCCAATCAAAAAGCAACTTAGTGGGGTTTCTATCTTGTGGCTTCCCGTAGTGCAGGCCGTTTTTCCTGAAAGAGAATCATTGGCCAAAAATTGTTCTAGGTTTGTGCTAGTCATGTGGCTGATTCTAGCATTTGTACTGATGCAAAGTTACACGGCATGCCTTTCATCAATCTTGACCGTACATCAGCTGCAACCTCGTTCTCTTAGTGAGAATGAAATTAGAACAGATCCCAACATTTACGTTGGATGCCACTATGGTTCATTCATCCATGGCCTACTGGTTGATAGCTTGAAGGTTGACAGTTCAAGGGTGAAGGAATACGCTGGCATCGAAAGTTACAAAGAGGCCTTGGACAAGGGAAGCCGTAAAGGCGGCGTCGATGCCATTTTTGACGAAGTTCCCTACATGAAAGTCTTCCTTAAGAAGTATGGTTCAAATTATGCCATGGTGGGGCCTAGGCACCGCACTGGTGGATTTGGCTTTGCATTTCCTAAGAATTCCACTTTAACCTCCTACTTCTCTCAAGCGATATTAAATGTCAGTGAGAGTAATGAAATGGACTGCATCGAGGATAAATATTTTAAAACTCATGACGATGATGATGGCAAATCTACTTCATCGTTAGATGATGATAGTGCCAGCCTCAGCGCATACAGCTTTGCAGGTTTGTTTGTGGTGTTTGGAATTCTTTCACTGCTAGCTTTGTTAGTCTCTGAACATCGTATTTGGAGAAGACATGTTATGCTAATGAAAATGTATAGCAAAGGATTGTTGGATCGGAGTTGTACAAGAATTAATCGGTCACAGGAAAGTTCTACAAGAAGAAGAAATGTTGGGGATGGAGAAGGTTCGAGAAACAGAGAAAATATTGGATCAGAAGATGGATACTATAACCACGCAAAGATATTGGTGGCATCTCTTCCTTAA 1542 0.4254 MASLNFLCHAYLIMISFAALLTAEIRASDDAGSLLGGKKLVIGVPKKPSFIQFVDAQLNPFNKTQLLNVTGYSIDVFLATIAYLRRSNYNISYEFSAFVDKSGKTTGGYDGFLYQLHHGKYDVAVADLSIVANRSHFVDFTLPYAQSDVRMLVKVRHDPRLNMWIFVRPFTWDMWLCIVVVCIFTGAVIIFMERNVQKDSTRQNSPIKKQLSGVSILWLPVVQAVFPERESLAKNCSRFVLVMWLILAFVLMQSYTACLSSILTVHQLQPRSLSENEIRTDPNIYVGCHYGSFIHGLLVDSLKVDSSRVKEYAGIESYKEALDKGSRKGGVDAIFDEVPYMKVFLKKYGSNYAMVGPRHRTGGFGFAFPKNSTLTSYFSQAILNVSESNEMDCIEDKYFKTHDDDDGKSTSSLDDDSASLSAYSFAGLFVVFGILSLLALLVSEHRIWRRHVMLMKMYSKGLLDRSCTRINRSQESSTRRRNVGDGEGSRNRENIGSEDGYYNHAKILVASLP 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00031 513 MobiDBLite consensus disorder prediction 471 497 - -
Pral5280g00031 513 Gene3D - 33 164 - -
Pral5280g00031 513 MobiDBLite consensus disorder prediction 474 497 - -
Pral5280g00031 513 SMART GluR_14 39 401 IPR001320 GO:0015276|GO:0016020
Pral5280g00031 513 CDD GluR_Plant 38 399 - -
Pral5280g00031 513 Pfam Bacterial extracellular solute-binding proteins, family 3 55 400 IPR001638 -
Pral5280g00031 513 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 466 IPR015683 -
Pral5280g00031 513 Gene3D - 165 294 - -
Pral5280g00031 513 SUPERFAMILY Periplasmic binding protein-like II 12 400 - -
Pral5280g00031 513 Gene3D - 295 405 - -
Pral5280g00031 513 Pfam Ligand-gated ion channel 401 434 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00031 Pral-Chr5280 328878 331108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00031 37 485 Ion Channels AT5G11210 33.115 1.99e-73 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00031 K05387 - pcin:129319224 761.911