Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4981g00060 ATGGGGTCCGAGGTTTGTGTCGGTGTTTCTGGTGGGTCGGCCACTGCTCATGAGTGGAAGAAGGGGTGGACTCTTTCATCTGGTGGATTCGCCCAATTTTGTAATAACTGCGGAATTTCGACCGAGTGCAAGCTTGACACCCTTGATTCCATATCTGCCTATGAGGCATCCATTTTCTGTAGTAAATTCCATCGTGAACAAACTGGTTGGAGGGACTGCAGCTTTTGTAACAAGCCTATCCACAGTGGATGCATAGTATCTAGGTATTTGTTCGACTACCTTGACTTTGGAGGTATAGGTTGCATCAGTTGTGTAAAGGCTTCTCGTTCGCATTTGAACACAAAAGAACCTAAAGGTGCTGTTACACCGACCACAACAAATGCAAGTGATTGTCGTCCTCATCACATTGATGGGAAACTGTTGGTGGATAATGTTGATGAAGGAAAACTTATGCAGTTCTGCAGAATTGTTGAAGCTAGTGAGACTAATGGTTTGCATCAGCCTCAAAGAGATAAAATGATTTCATCTAGTGGGTTGAAGAGCCAAGATATTAAGTGTCTAACAAGGGATATGGATTCAGGATTTTCAAATATGCTTACAACATCGATTCGGTCACTAAAATTTCCTTTATTAGAAAATAATAGACCAACATGGGAGATTAAAAATATGCTTGAACCGCCTGCACAACCATCTTTGAGTATGTCCCTGGGAATTCCATCAGGAAACTTTGCCCTTGCTTCTGCTAGAGAAATTGCAGAAGAAAAGCTTGAGGGCAAACCTTCTTCTCTGTTTCATCAAGGACAGAGATCTCCCCCTGTATTTGCTAAACCATCAAAGACTGGCCTTACCATGAACATAGAAACAAATAAAGGAATGAATTCTATTTCTCAGGCCCATCTTGCCCGGCCACCTGTTGAAGGAAGGGGCAAGAGCCAGCTACTTCCTCGGTACTGGCCTAGGATTACTGATGAAGAGCTGGAGCAATTGTCTGGAAATTTGAAATCCACTGTGGTGCCATTATTTGAGAAGGTGCTGAGTGCCAGTGATGCAGGTCGAATTGGTCGCCTTGTTCTTCCAAAAGCTTGTGCTGAAGCTTTTTTCCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGGAAATGCAAGATGTGAAGGGGAATGAATGGACGTTTCAATTCAGATTTTGGCCTAATAACAACAGTAGGATGTACGTGTTGGAGGGTGTGACCCCTTGCATACAGTCAATGCAATTGATTGCGGGTGATACTGTGACATTTAGCAGGATAGATCCTGGGGGCAGACTTATTATGGGTTTCAGAAAGACATCAAATGCTCTAGAAAGTCAGGATGTGTCTACATCTGCGCATTCTAATGGGATTACAGCAAAGGAAACAGCCATTTCTGGTGCAAGGGAGAGCCTGCCGTCAGGAAGTAGTTATTCTGATCTTCTTCAGTCTGTGGAAGGGAACAGCGAGCCTCACTTAAATAGACAATCAGAACACCTGCATTTAGGTAACAGGGTAGCTGATTTTCCTCAAACGGAAATTTCTGGCCAGATGATGAAAAATGATTCCCTGCAGCAATCAGTTTCAGTTTCAGATAGGAAAAGGACTCGGAACATTGGGCCTAAAAATAAGAGGTTGCGCATTAATTGTGAAGATGCTTTGGAGTTGAGACTAACGTGGGAGGAAGCACAAGACTTACTCCGTCCACCACCCAGTGTTCAGCCAATCATTGTTACAATTGAGGACCACATTTTTGAGGAGTACAATGAACCCCCAGTTTTTGGGAAGAGAACTATATTCAGTGCCTGCCCGTCTGGGGGACAGGAACAATGGGCTTCATGTGATGATTGCTCTAAATGGCGAAAATTGCCTGTAGACGTTCTTCTACCACCTAAGTGGACTTGTTCTGAAAATGTCTGGGATCCAACCAGATCTTCATGTTCTGCACCAGAGGAGCTAGGACCTAAGGAAGATCTTTCGAAATCCAGCAAAGACTTTAAAAGGCGAAGATTTACAGAAAATAATAAGTCAACTGGAGAATTTGAACCTTCAGGCCTTGATGCTCTTGCTAATGTGGCAGTGTTGGGAGATGGTCACGGGGATCCTTCTGAGTCATCAGCTGGGCCCACCACCAAACATCCTAGACATCGTCCTGGCTGCACCTGCATTGTCTGCATTCAGCCACCAAGTGGAAAGGGAAGACATCCTGCCGACTGTACTTGCAATGTGTGCATGACTGTGAAAAGGAGGTTCAAAACCCTTATGCTGCGTAAGAAGAAACGCCAATCGGAACGCGAAGCAGATGTTAGCCACCAGATGGATCATAGCGAAGCGTCAGATATGAATGGAGGATCTAGGGGAGACACAAGTCATGTGGAGAAAGAAGGGAGCATGAGTAGAAGACAGCTTGAGGTGGGTGAATGCAGTGCCGTGCAGATAGATCTGAATAGCCATCCTGATCGCGATGACATGCAAGTTGATGCACCAAGCATGAATGGTCATGTTGGAGCTCCAAACTGTCATCCACTACAGGCATATATGGATCAAAATGGCCCTAATGGAGGTCAGGAGTGCTTCTCTAATGGGGGATGCTTTGGACCGGTTATCTTGGAGAAGGAAGGGACAGATGATAAGGTATATTATGATGCCAATTCAAGTCAGACCAATCCTCCTTGA 2679 0.4472 MGSEVCVGVSGGSATAHEWKKGWTLSSGGFAQFCNNCGISTECKLDTLDSISAYEASIFCSKFHREQTGWRDCSFCNKPIHSGCIVSRYLFDYLDFGGIGCISCVKASRSHLNTKEPKGAVTPTTTNASDCRPHHIDGKLLVDNVDEGKLMQFCRIVEASETNGLHQPQRDKMISSSGLKSQDIKCLTRDMDSGFSNMLTTSIRSLKFPLLENNRPTWEIKNMLEPPAQPSLSMSLGIPSGNFALASAREIAEEKLEGKPSSLFHQGQRSPPVFAKPSKTGLTMNIETNKGMNSISQAHLARPPVEGRGKSQLLPRYWPRITDEELEQLSGNLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAFFPPISQSEGLPLEMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLIAGDTVTFSRIDPGGRLIMGFRKTSNALESQDVSTSAHSNGITAKETAISGARESLPSGSSYSDLLQSVEGNSEPHLNRQSEHLHLGNRVADFPQTEISGQMMKNDSLQQSVSVSDRKRTRNIGPKNKRLRINCEDALELRLTWEEAQDLLRPPPSVQPIIVTIEDHIFEEYNEPPVFGKRTIFSACPSGGQEQWASCDDCSKWRKLPVDVLLPPKWTCSENVWDPTRSSCSAPEELGPKEDLSKSSKDFKRRRFTENNKSTGEFEPSGLDALANVAVLGDGHGDPSESSAGPTTKHPRHRPGCTCIVCIQPPSGKGRHPADCTCNVCMTVKRRFKTLMLRKKKRQSEREADVSHQMDHSEASDMNGGSRGDTSHVEKEGSMSRRQLEVGECSAVQIDLNSHPDRDDMQVDAPSMNGHVGAPNCHPLQAYMDQNGPNGGQECFSNGGCFGPVILEKEGTDDKVYYDANSSQTNPP 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4981g00060 892 MobiDBLite consensus disorder prediction 518 538 - -
Pral4981g00060 892 Gene3D - 319 445 IPR015300 -
Pral4981g00060 892 Gene3D - 603 654 - -
Pral4981g00060 892 CDD B3_DNA 339 440 IPR003340 GO:0003677
Pral4981g00060 892 ProSiteProfiles Zinc finger CW-type profile. 606 656 IPR011124 GO:0008270
Pral4981g00060 892 SUPERFAMILY DNA-binding pseudobarrel domain 339 441 IPR015300 -
Pral4981g00060 892 ProSiteProfiles B3 DNA-binding domain profile. 341 442 IPR003340 GO:0003677
Pral4981g00060 892 MobiDBLite consensus disorder prediction 642 717 - -
Pral4981g00060 892 Pfam CW-type Zinc Finger 611 653 IPR011124 GO:0008270
Pral4981g00060 892 MobiDBLite consensus disorder prediction 655 677 - -
Pral4981g00060 892 Pfam B3 DNA binding domain 341 440 IPR003340 GO:0003677
Pral4981g00060 892 FunFam B3 domain-containing transcription repressor VAL1 319 446 - -
Pral4981g00060 892 SMART B3_2 341 441 IPR003340 GO:0003677
Pral4981g00060 892 MobiDBLite consensus disorder prediction 760 776 - -
Pral4981g00060 892 MobiDBLite consensus disorder prediction 756 804 - -
Pral4981g00060 892 MobiDBLite consensus disorder prediction 518 535 - -
Pral4981g00060 892 MobiDBLite consensus disorder prediction 788 802 - -
Pral4981g00060 892 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 5 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4981g00060 Pral-Chr4981 284153 291810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4981g00060 1 829 B3 DNA Binding Superfamily AT2G30470 46.283 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4981g00060 B3 8.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4981g00060 K09287 - gmx:100789848 1122.46