Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4981g00056 ATGGGGTCCGAGGTTTGTGTCGGTGTTTCTGGTGGGTCGGCCACTGCTCATGAGTGGAAGAAGGGGTGGACTCTTTCATCTGGTGGATTCGCCCAATTTTGTAATAACTGCGGAATTTCGACCGAGTGCAAGCTTGACACCCTTGATTCCATATCTGCCTATGAGGCATCCATTTTCTGTAGTAAATTCCATCGTGAACAAACTGGTTGGAGGGACTGCAGCTTTTGTAACAAGATATCAAATCTATTTGACCTGGTTTGGCAGCCTATCCACAGTGGATGCATAGTATCTAGGTATTTGTTCGACTACCTTGACTTTGGAGGTATAGGTTGCATCAGTTGTGTAAAGGCTTCTCGTTCGCATTTGAACACAAAAGAACCTAAAGGTGCTGTTACACCGACCACAACAAATGCAAGTGATTGTCGTCCTCATCACATTGATGGGAAACTGTTGGTGGATAATGTTGATGAAGGAAAACTTATGCAGTTCTGCAGAATTGTTGAAGCTAGTGAGACTAATGGTTTGCATCAGCCTCAAAGAGATAAAATGATTTCATCTAGTGGGTTGAAGAGCCAAGATATTAAGTGTCTAACAAGGGATATGGATTCAGGATTTTCAAATATGCTTACAACATCGATTCGGTCACTAAAATTTCCTTTATTAGAAAATAATAGACCAACATGGGAGATTAAAAATATGCTTGAACCGCCTGCACAACCATCTTTGAGTATGTCCCTGGGAATTCCATCAGGAAACTTTGCCCTTGCTTCTGCTAGAGAAATTGCAGAAGAAAAGCTTGAGGGCAAACCTTCTTCTCTGTTTCATCAAGGACAGAGATCTCCCCCTGTATTTGCTAAACCATCAAAGACTGGCCTTACCATGAACATAGAAACAAATAAAGGAATGAATTCTATTTCTCAGGCCCATCTTGCCCGGCCACCTGTTGAAGGAAGGGGCAAGAGCCAGCTACTTCCTCGGTACTGGCCTAGGATTACTGATGAAGAGCTGGAGCAATTGTCTGGAAATTTGAAATCCACTGTGGTGCCATTATTTGAGAAGGTGCTGAGTGCCAGTGATGCAGGTCGAATTGGTCGCCTTGTTCTTCCAAAAGCTTGTGCTGAAGCTTTTTTCCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGGAAATGCAAGATGTGAAGGGGAATGAATGGACGTTTCAATTCAGATTTTGGCCTAATAACAACAGTAGGATGTACGTGTTGGAGGGTGTGACCCCTTGCATACAGTCAATGCAATTGATTGCGGGTGATACTGTGACATTTAGCAGGATAGATCCTGGGGGCAGACTTATTATGGGTTTCAGAAAGACATCAAATGCTCTAGAAAGTCAGGATGTGTCTACATCTGCGCATTCTAATGGGATTACAGCAAAGGAAACAGCCATTTCTGGTGCAAGGGAGAGCCTGCCGTCAGGAAGTAGTTATTCTGATCTTCTTCAGTCTGTGGAAGGGAACAGCGAGCCTCACTTAAATAGACAATCAGAACACCTGCATTTAGGTAACAGGGTAGCTGATTTTCCTCAAACGGAAATTTCTGGCCAGATGATGAAAAATGATTCCCTGCAGCAATCAGTTTCAGTTTCAGATAGGAAAAGGACTCGGAACATTGGGCCTAAAAATAAGAGGTTGCGCATTAATTGTGAAGATGCTTTGGAGTTGAGACTAACGTGGGAGGAAGCACAAGACTTACTCCGTCCACCACCCAGTGTTCAGCCAATCATTGTTACAATTGAGGACCACATTTTTGAGGAGTACAATGAACCCCCAGTTTTTGGGAAGAGAACTATATTCAGTGCCTGCCCGTCTGGGGGACAGGAACAATGGGCTTCATGTGATGATTGCTCTAAATGGCGAAAATTGCCTGTAGACGTTCTTCTACCACCTAAGTGGACTTGTTCTGAAAATGTCTGGGATCCAACCAGATCTTCATGTTCTGCACCAGAGGAGCTAGGACCTAAGGAAGATCTTTCGAAATCCAGCAAAGTGTTGGGAGATGGTCACGGGGATCCTTCTGAGTCATCAGCTGGGCCCACCACCAAACATCCTAGACATCGTCCTGGCTGCACCTGCATTGTCTGCATTCAGCCACCAAGTGGAAAGGGAAGACATCCTGCCGACTGTACTTGCAATGTGTGCATGACTGTGAAAAGGAGGTTCAAAACCCTTATGCTGCGTAAGAAGAAACGCCAATCGGAACGCGAAGCAGATGTTAGCCACCAGATGGATCATAGCGAAGCGTCAGATATGAATGGAGGATCTAGGGGAGACACAAGTCATGTGGAGAAAGAAGGGAGCATGAGTAGAAGACAGCTTGAGGTGGGTGAATGCAGTGCCGTGCAGATAGATCTGAATAGCCATCCTGATCGCGATGACATGCAAGTTGATGCACCAAGCATGAATGGTCATGTTGGAGCTCCAAACTGTCATCCACTACAGGCATATATGGATCAAAATGGCCCTAATGGAGGTCAGGAGTGCTTCTCTAATGGGGGATGCTTTGGACCGGTTATCTTGGAGAAGGAAGGGACAGATGATAAGGTATATTATGATGCCAATTCAAGTCAGACCAATCCTCCTTGA 2622 0.4485 MGSEVCVGVSGGSATAHEWKKGWTLSSGGFAQFCNNCGISTECKLDTLDSISAYEASIFCSKFHREQTGWRDCSFCNKISNLFDLVWQPIHSGCIVSRYLFDYLDFGGIGCISCVKASRSHLNTKEPKGAVTPTTTNASDCRPHHIDGKLLVDNVDEGKLMQFCRIVEASETNGLHQPQRDKMISSSGLKSQDIKCLTRDMDSGFSNMLTTSIRSLKFPLLENNRPTWEIKNMLEPPAQPSLSMSLGIPSGNFALASAREIAEEKLEGKPSSLFHQGQRSPPVFAKPSKTGLTMNIETNKGMNSISQAHLARPPVEGRGKSQLLPRYWPRITDEELEQLSGNLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAFFPPISQSEGLPLEMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLIAGDTVTFSRIDPGGRLIMGFRKTSNALESQDVSTSAHSNGITAKETAISGARESLPSGSSYSDLLQSVEGNSEPHLNRQSEHLHLGNRVADFPQTEISGQMMKNDSLQQSVSVSDRKRTRNIGPKNKRLRINCEDALELRLTWEEAQDLLRPPPSVQPIIVTIEDHIFEEYNEPPVFGKRTIFSACPSGGQEQWASCDDCSKWRKLPVDVLLPPKWTCSENVWDPTRSSCSAPEELGPKEDLSKSSKVLGDGHGDPSESSAGPTTKHPRHRPGCTCIVCIQPPSGKGRHPADCTCNVCMTVKRRFKTLMLRKKKRQSEREADVSHQMDHSEASDMNGGSRGDTSHVEKEGSMSRRQLEVGECSAVQIDLNSHPDRDDMQVDAPSMNGHVGAPNCHPLQAYMDQNGPNGGQECFSNGGCFGPVILEKEGTDDKVYYDANSSQTNPP 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4981g00056 873 FunFam B3 domain-containing transcription repressor VAL1 329 456 - -
Pral4981g00056 873 SMART B3_2 351 451 IPR003340 GO:0003677
Pral4981g00056 873 MobiDBLite consensus disorder prediction 741 757 - -
Pral4981g00056 873 MobiDBLite consensus disorder prediction 528 549 - -
Pral4981g00056 873 MobiDBLite consensus disorder prediction 652 698 - -
Pral4981g00056 873 Pfam B3 DNA binding domain 351 450 IPR003340 GO:0003677
Pral4981g00056 873 MobiDBLite consensus disorder prediction 528 545 - -
Pral4981g00056 873 SUPERFAMILY DNA-binding pseudobarrel domain 349 451 IPR015300 -
Pral4981g00056 873 MobiDBLite consensus disorder prediction 737 775 - -
Pral4981g00056 873 ProSiteProfiles Zinc finger CW-type profile. 616 666 IPR011124 GO:0008270
Pral4981g00056 873 ProSiteProfiles B3 DNA-binding domain profile. 351 452 IPR003340 GO:0003677
Pral4981g00056 873 Pfam CW-type Zinc Finger 621 663 IPR011124 GO:0008270
Pral4981g00056 873 Gene3D - 329 455 IPR015300 -
Pral4981g00056 873 Gene3D - 613 664 - -
Pral4981g00056 873 CDD B3_DNA 349 450 IPR003340 GO:0003677
Pral4981g00056 873 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 5 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4981g00056 Pral-Chr4981 284152 291810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4981g00056 1 810 B3 DNA Binding Superfamily AT2G30470 44.313 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4981g00056 B3 8.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4981g00056 K09287 - gmx:100789848 1066.22