Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4163g00009 ATGGCAAAGGGTTGCGCCACCAACACATATGAAGAGGCTCGAAAGCAACGGCTTGAAGAAAACAGAAAAAGATTCGAGGATCTGGGGATTTCAAAAATTTCAAAGAAGTTATCTGAACTCGTCACACCAGAGAAGAAGGCTCCTCCGCAATGTCGACCAAAACAAAAATCAAATAGTAATGATGTCGTGGAACCAAGACGCTCTTCTCGCGTGCGAAATTCTGTTCCTTCATATCGTGAGGAGGTATTCATAGATCTTCCACCTTTGCGGAAGAGGTCAAGGTCGTCTTCATCATGGGGAAGTTATGTTGCAAGGCCACTAGATGAAATAAAAGAAGCCACAGATGAAGAAAGAAATCGTGCTTTCATGGCTGCAGAAACACTTCTAAGCGATTTACAGACTTCAAATCCAGCATTTATTAAGTCAATGGTCCGGTCTCATGTTTATAGTTGCTTTTGGCTGGGTCTCCCTAATAGATTTTGCCACGACCATCTTCCTAAGACTACGTGTGACATGATTTTAGAGGATGAAAATGGCTCAGAATTTGAGGCTGTTTTCCTTGGCAATAGAACTGGGCTCAGCGGAGGGTGGAGAGGATTTGCATTGGATCATAAGTTGGATGATGGTGATGCACTTGTTTTTGAATTAGTTGAACCTACCAGATTTAAGATTTACATTGTCAAAGCCTTTCCAGAATCAGCTGAAGATGGACAAGAGATTTTGGATGAACAAGTTGATACTTGTGCAACCAAGAAGCACAAACCACAATCAAACAAGACAAAAATTCTTAAACAAGGTATTGTGCATGAAACTAAAGAATCTGCAAATTCTCAGGAATACATTGCAGAAAATAATGCAGACAATGGAATCGAGCCACAAGGGCTAAACACAACCAGGAAAACTAGGTTTTCTCAGAGAAAATCTCAGAAAGAATCTGAAGATTGTAAACTGCTTCCTTCTGATGGTTCTATAAAGGAAGAAAACATTGAACAAGGGAAAAATTGTACTCCTAAGAAAGCAACTTCTCAAGCAAACAAAACAAGGTCAAAACGTGGTACACGAAACAAATGA 1071 0.4015 MAKGCATNTYEEARKQRLEENRKRFEDLGISKISKKLSELVTPEKKAPPQCRPKQKSNSNDVVEPRRSSRVRNSVPSYREEVFIDLPPLRKRSRSSSSWGSYVARPLDEIKEATDEERNRAFMAAETLLSDLQTSNPAFIKSMVRSHVYSCFWLGLPNRFCHDHLPKTTCDMILEDENGSEFEAVFLGNRTGLSGGWRGFALDHKLDDGDALVFELVEPTRFKIYIVKAFPESAEDGQEILDEQVDTCATKKHKPQSNKTKILKQGIVHETKESANSQEYIAENNADNGIEPQGLNTTRKTRFSQRKSQKESEDCKLLPSDGSIKEENIEQGKNCTPKKATSQANKTRSKRGTRNK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4163g00009 356 MobiDBLite consensus disorder prediction 304 333 - -
Pral4163g00009 356 CDD B3_DNA 137 228 IPR003340 GO:0003677
Pral4163g00009 356 MobiDBLite consensus disorder prediction 284 356 - -
Pral4163g00009 356 MobiDBLite consensus disorder prediction 39 73 - -
Pral4163g00009 356 MobiDBLite consensus disorder prediction 284 302 - -
Pral4163g00009 356 Coils Coil 8 28 - -
Pral4163g00009 356 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 44 229 IPR044837 -
Pral4163g00009 356 ProSiteProfiles B3 DNA-binding domain profile. 139 230 IPR003340 GO:0003677
Pral4163g00009 356 SMART B3_2 139 230 IPR003340 GO:0003677
Pral4163g00009 356 MobiDBLite consensus disorder prediction 334 348 - -
Pral4163g00009 356 SUPERFAMILY DNA-binding pseudobarrel domain 133 228 IPR015300 -
Pral4163g00009 356 Pfam B3 DNA binding domain 139 226 IPR003340 GO:0003677
Pral4163g00009 356 Gene3D - 113 230 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4163g00009 Pral-Chr4163 61485 64765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4163g00009 10 229 B3 DNA Binding Superfamily AT5G58280 50.403 1.20e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4163g00009 B3 2.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4163g00009 - - pcin:129303902 548.895