Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3612g00053 ATGACAGACTATAGGTCGCCGCCGACTATGAACCTTTGGTCCGATGACAACTCCTCCGTTATGGAGGCTTTCATGAGCTCCGATCTATCCGTGCTCTGGCCTGCTCCGCCTCAGCCCCAGTCCTCTGCTTCCACTACTACTCCTGGACCCGACCCCACCAAGCCTCTTCCTCAGTCTCAGTCTTCCGCTGCTCTCTTCAATCAAGAAACCCTTCAGCAGCGCCTTCTGGCTTTGATTGAAGGTGCCAGAGAGAGCTGGACCTATGCTATCTTTTGGCAATCGTCGTACGACTACTCCGGCGCGTCCTTGCTCGGCTGGGGCGATGGGTACTACAAAGGGGAGGAAGATAAAGGAAAAGGGAAGGCCAAAACGCTGTCGTCTGCGGCGGAGCAGGAGCACCGGAAGAAGGTTCTACGCGAGCTGAATTCCCTCATTTCTGGATCCTCTGCCCCCAGCGACGACGCCGTGGACGAAGAAGTCACCGATACGGAGTGGTTCTTTCTCGTTTCCATGACTCAATCGTTTGTCAACGGCGACGGGTTACCGGGTCAGGCCTTCTACAATTCTACCCCTGTCTGGATCACCGGTGGGGATAGGCTGGCGGCTTCGACCTGCGAAAGAGCGAGACAGGGCCAGGTTTTCGGGCTTCGGACTTTGGTTTGTATCCCATCGGCGAATGGGGTGGTGGAGCTGGGATCCACTGAATTGATTTTCCAGAACTCGGATCTGATGAACAAGGTGAAAGTATGGTTCAATTTCAACAATCCCGAAATTGGTTCGTGGCCTCTCATGACTCCTAATGCCGATCAAGGTGAGAACGACCCTTCCTCGCTTTGGCTTAACGATCCGTCTTCTGGAATTGAAATCAGAGATTCGACCAACGCCACTGTTCCGGCGTCCGTTCCGAGCTCGAATAACAGTCACAACATCCAGTCAGTTGCTAAGCCAATGCAGTTTGAAACCCCTGTTTCGAGTACTTTAACTGAAGCACCAAGTGTTGTTCATGTCCCGAATACTCAATATGGTAACCAGCAACGGCAACCGGCACAGCAATCGCAGAGCCAGGGGTTCTTCTCGAAGGAGTTGAACTTTTCTGAATATGGGTTCGACGGAAACGGCCTAAAGAACGGGAATATGCATTCCTTGAAGCCGGAATCAGGTGAAATTTTGAACTTTGGGGATAGCAAGAGGAACTCTTATGGTGGGAATGGGAATTTCTTTACAGGACAGAGTCCATTCGTCGCAGAAGACAACAAGAAGAGGAAGTCACCTACTTCCAAGGGTAGTAACGATGAAGGGATGCTCTCGTTTACTTCCGGTGTGGTTTTGCCCACTTCTAACATGAAGTCTTCTGGCGGCGGCGGCGATTCCGATCACTCGGATCTTGAAGCTTCGGTGGTGAAGGAAGCGGATAGTAGCAGAGTGGTAGAACTAGAAAAGCGACCTCGCAAAAGAGGACGAAAGCCGGCGAATGGCAGGGAGGAGCCTCTGAATCACGTTGAAGCAGAGAGGCAGAGGAGAGAGAAGCTGAACCAGAGGTTCTACGCACTTCGTGCCGTAGTCCCAAACGTGTCAAAAATGGACAAAGCATCGCTTCTGGGCGACGCCATATCTTACATCAACGAGCTCAAGTCGAAGCTCCAGAATTTAGAATTGAACAATAATGATTTACAGAAGCAGCTGGATTCAGTCAAGAAGGAACTCGAGCAGGCCACTAGTAAAGATTCTCGTGCACCCCCACCAGACAAAGAACAAAAGACCTCAAACAACCAAGTAAACGGCAAGCTAATAGATTTAGACATCGATGTGAAGATCATAGGTTGGGATGCAATGATTCGAATCCAATGTAGCAAGAGGAACCATCCGGCAGCGAGATTGATGGCCGCTTTACAGGAGCTAGACCTGGAAGTGAACCACGCGAGTGTGTCGGTAGTGAATGATCTGATGATCCAACAAGCCACTGTAAAGATGGGAAGTCGATTTTACACACAGGAGCAGCTCCGGCTAGCACTTGCGTCCGAGGTTGGAGATGTTCGATAA 2040 0.5088 MTDYRSPPTMNLWSDDNSSVMEAFMSSDLSVLWPAPPQPQSSASTTTPGPDPTKPLPQSQSSAALFNQETLQQRLLALIEGARESWTYAIFWQSSYDYSGASLLGWGDGYYKGEEDKGKGKAKTLSSAAEQEHRKKVLRELNSLISGSSAPSDDAVDEEVTDTEWFFLVSMTQSFVNGDGLPGQAFYNSTPVWITGGDRLAASTCERARQGQVFGLRTLVCIPSANGVVELGSTELIFQNSDLMNKVKVWFNFNNPEIGSWPLMTPNADQGENDPSSLWLNDPSSGIEIRDSTNATVPASVPSSNNSHNIQSVAKPMQFETPVSSTLTEAPSVVHVPNTQYGNQQRQPAQQSQSQGFFSKELNFSEYGFDGNGLKNGNMHSLKPESGEILNFGDSKRNSYGGNGNFFTGQSPFVAEDNKKRKSPTSKGSNDEGMLSFTSGVVLPTSNMKSSGGGGDSDHSDLEASVVKEADSSRVVELEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQNLELNNNDLQKQLDSVKKELEQATSKDSRAPPPDKEQKTSNNQVNGKLIDLDIDVKIIGWDAMIRIQCSKRNHPAARLMAALQELDLEVNHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALASEVGDVR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3612g00053 679 MobiDBLite consensus disorder prediction 33 49 - -
Pral3612g00053 679 MobiDBLite consensus disorder prediction 428 454 - -
Pral3612g00053 679 MobiDBLite consensus disorder prediction 401 504 - -
Pral3612g00053 679 Pfam Helix-loop-helix DNA-binding domain 498 543 IPR011598 GO:0046983
Pral3612g00053 679 FunFam Transcription factor bHLH13 487 561 - -
Pral3612g00053 679 MobiDBLite consensus disorder prediction 31 60 - -
Pral3612g00053 679 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 494 543 IPR011598 GO:0046983
Pral3612g00053 679 MobiDBLite consensus disorder prediction 564 591 - -
Pral3612g00053 679 PANTHER MYC 44 673 IPR045084 GO:0003700|GO:0006355
Pral3612g00053 679 SMART finulus 500 549 IPR011598 GO:0046983
Pral3612g00053 679 CDD bHLH_AtAIB_like 491 567 - -
Pral3612g00053 679 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 251 IPR025610 -
Pral3612g00053 679 Gene3D - 486 574 IPR036638 GO:0046983
Pral3612g00053 679 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 495 567 IPR036638 GO:0046983
Pral3612g00053 679 Coils Coil 533 574 - -
Pral3612g00053 679 MobiDBLite consensus disorder prediction 564 582 - -
Pral3612g00053 679 MobiDBLite consensus disorder prediction 461 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3612g00053 Pral-Chr3612 371207 373674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3612g00053 1 676 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.172 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3612g00053 bHLH-MYC_N 2e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3612g00053 K13422 - vvi:100250607 919.842