Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02646 ATGGCTTTCTTCAGGAACTTTTCAAATGATACAGTATCACATGGTGTCATGGAAGATAAAAGCCAAGGACAGAATGCAAATAGAACTCATAGATCAGTAGGTAATGAATGTACTGATGCAACTTCTAGCGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGGTGAACCAGTTGGTTCTGGTAGACTGCAAACTGAGGCAACAGCCGATGATGGAGATGCCGTGAAAGAATCAACCTTGCAGACTGCTGGTAGTAAAACAGCTATGATGGGAAGGTGGGGTTCAAGTTTTTGGAAGGACTGCGGGCAAATGGGCCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGATCAGATTATAGAAATGCAGATGGGTCTGAAGATAATTCATTGGATGGAAGAGCAGGAAGATTAGACTCAGATGATGATGATGGGCAAAAGGAGGAAGGAAAAGGTCCAAGAGGTCTCTCTGATGTTCCCGCTGAAGAAATGTTGTCGGATGAGTATTATGAGCAGGATGGGGAAGAGCAAAGTGATTCACTACATTACGGTGGTATAAAAAAGCCTTCTGAATCGAATTCATGGCCACAACGGATGTCAACCACTGCAAATAGAACTTTGCATAGGAACTCGAGGTTTTCAGATGATGCTGAAGAAGATGACGACGATGGAGATAATGATAATGATGGTGATGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCTGCCACAACTGGTCATGCTGGAAATAAGGATAAAGATTGGGAAGGTGAAGGCTCTGATGAAGATGATGACAGTGATGAAAATATAGTTGTCTCAGATGATGATGAAACTTTCTATGCTAAACGGCCTAAAGGAAGGCAACGAGGTAAGATTGGACAAAACATAAAATCTACCAGAGATCGCAAAGTGTATGCTGCATCTGGTCGGCAAAGAAGAGTTAAATCATCTTTTGAGGAAAATGAGTCAACAACGGAGGATTCTGACAATGACAGTGATGAGGATTTCAAAAGCTCAAAAAAGCGAAGTGTTCATGTTCGCAAAAATAATGGTCGTTCTTCTTCGGCTATAGGTTTTTCTATGCGCAGCAGTGAAGTTCGCACTTCTAGTAGGACTGTTAGGAAGGTATCATATGTGGAAAGTGAAGAAAGTGAAGAAGTTGATGAAGGGAAAAAGAAGAAGTCCCAAAAGGAAGAAATTGACGAGGATGATAGTGACTCCATTGAAAAGGTGCTTTGGCATCAACCAAAGGGCACAGCTGAAGATGCTGAAAGGAATAATCGTTCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCAGAAATTGATTGGACTGAGATGGAATTTTTGATAAAATGGAAAGGGCAATCACATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAACCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATGAGGTACAGAAGGACAATTTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAACAGAACAGTCAGGTGGAAAGGATAATTGCAGATAGAATCAGCAAAGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACATTGATATTGCTTTTGCCCAACATGCTATTGACGAGTATAAGGCTCGTGAGGCTGCTATGGCGGCAGTTCAAGGAAAGATGGTAGATTCTCAGCGTAAGAAAAGTAAAGCAAGTTTGCGAAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTCGGAAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTTTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCACTCTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCTAGTCGAGAGGTTTGTCAACAGTATGAATTTTATAATGAAAAAAGACCAGGGAAGCCAATAAAATTCAATGCACTTTTGACAACATATGAAGTAGTTTTGAAGGATAAGGCTTTTCTGTCCAAGATCAGATGGAGTTACCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACGACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCATTGCTTCATTTCCTTGACCCTGACAAGTTCAGGAGCAAGGATGAATTTGTTCAAAATTATAAGAATCTGAGTTCTTTTAATGAAAATGAGCTTGCAAATCTTCATACAGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTGCCCCCTAAAATTGAGCGTATACTTCGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGGGGGAATCAGGTTTCTCTTCTAAATATTGTGGTTGAATTAAAAAAGTGCTGCAACCATCCGTTCTTGTTTGAAAGTGCTGATCATGGCTATGGTGGGGACTCAGGGAGTAGTGATAACAGTAAACTAGAGAGAATTGTTTTTAGCAGCGGCAAGCTTGTCATACTTGATAAGCTTCTTGTTCGATTGCATGAAACCAAGCATCGTGTATTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAATATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTTTGGGTATAAACCTTGCCACAGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGTAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAAATGGTTCTGGATCACTTGGTGATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCTGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAGAGCAAGAAACGACTCTTAAGTATGGATATAGATGAAATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAAGAACCTGATGGGGAACAGGGAAATGAGTTATTAAGTGCCTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGGAGTTTCTGGAGCCGATGGATAAAGCCAGATTCTGTGTTCCAAGCAGAGGAAGCTCTTGCTCCTCGTTCTGCTAGAAATATTAAAAGCTATGCAGAAGTTGATCCATCTGAAAGAACTAATAAAAGAAAAAAGAAGGAACCTGAACCACCTGAACGAATTCAGAAACGGCGAAAAGCAGAGTATTCTGCTCCTGCTGTACCAATGATTGAAGGAGCATGTGTTCAAGTGAGAAGTTGGTCATATGGGAATTTATCTAAAAGAGACGCACTTCGTTTTTCGCGTTCAGTTATGAAATATGGCAATGAGAGCCAAATTGACTTAATTGCTGCCGAGGTGGGTGGTGCTGTTGGTGCAGCTCCAACTGGAGCACAGATTGAACTTTTCAATGCTCTTATTGATGGCTGTACAGAGGCAGTGGAACTTGGAAATTTAGATGTGAAGGGGCCTCTGCTGGATTTTTTTGGTGTCCCTGTGAAGGCAAGTGATCTACTTACCCGTGTCCAACAACTTCAACTTCTGGCAAAGCGCATTGATCGATATGAAGATCCTATTGCACAATTTCGTGTTCTGTCATATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAATATATTTCCATGGGTTTGGTAATTGGGAAAAGATAAGATTAGATGAAAGACTTGGCCTCACGAAAAAAATTGCACCTGTAGAACTTCAACACCATGAAACTTTCTTACCACGAGCTCCAAATTTAAAAGATCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCGGTTCTCGGTGTGAAAAATGCCAATAGCAAAGTTGGACGGAAGCCTTCAAAGAAAGAGAGAGATAATATCATCTCATTGGTACGTGGGCAGGAGAAAAAGAAAAAATCGGGTTCTGTTAATGTCCAAATAAGAAAGGATAGATTTCAAAAACCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAACGAGGAAGTATATGAGCAGTTCAAGGAGGTGAAATGGATGGAATGGTGTCAAGATGTAATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTTCCCAAGGAAAAGGTGCTTTCAAAAATACGCAACTATTTGCAACTTCTTGGGCGAAGGATAGATCAAATTGTGTTGGAACATGAAGAGGAACCCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATATGTCTCCACTTTTTCCCATCTTTCAGGGGAAAGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGGGGTTGGCCCCTCTCATGGCAATGGGTCGGTATCTGTTTCATTTACCAGAAATGGAAATCCATTCCGTGCCCATATGGAGAGGCAAAGAGGATTAAAAAATATGAATACCTATCAAATGCCAGAAGCAGTTGATAATAGTGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGATAATCAATTCCAGGGTCAGCCGCCACCTCAAAGGACCGGAAGTAATGGACTCCGGATTACTGATCCCAACTCACTCGGGATCCTTGGTGCTGGGCCATCGGATAAACGCTTTGCTAATGAGAAACCTTATAGGACACAACCTGGTGGGTTTCCTTCAAGACAGGGCTTCTCCTCAGGTATAAAGTAA 5280 0.4059 MAFFRNFSNDTVSHGVMEDKSQGQNANRTHRSVGNECTDATSSEKEFDMNMEAQYESDGEPVGSGRLQTEATADDGDAVKESTLQTAGSKTAMMGRWGSSFWKDCGQMGPQNGSESGQESKSGSDYRNADGSEDNSLDGRAGRLDSDDDDGQKEEGKGPRGLSDVPAEEMLSDEYYEQDGEEQSDSLHYGGIKKPSESNSWPQRMSTTANRTLHRNSRFSDDAEEDDDDGDNDNDGDDADYEEEDEADEDDPDDADFEPATTGHAGNKDKDWEGEGSDEDDDSDENIVVSDDDETFYAKRPKGRQRGKIGQNIKSTRDRKVYAASGRQRRVKSSFEENESTTEDSDNDSDEDFKSSKKRSVHVRKNNGRSSSAIGFSMRSSEVRTSSRTVRKVSYVESEESEEVDEGKKKKSQKEEIDEDDSDSIEKVLWHQPKGTAEDAERNNRSTEPVLMSHLFDSEIDWTEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDMRYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMAAVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNEKRPGKPIKFNALLTTYEVVLKDKAFLSKIRWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHTELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEPDGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDSVFQAEEALAPRSARNIKSYAEVDPSERTNKRKKKEPEPPERIQKRRKAEYSAPAVPMIEGACVQVRSWSYGNLSKRDALRFSRSVMKYGNESQIDLIAAEVGGAVGAAPTGAQIELFNALIDGCTEAVELGNLDVKGPLLDFFGVPVKASDLLTRVQQLQLLAKRIDRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIYFHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSKVGRKPSKKERDNIISLVRGQEKKKKSGSVNVQIRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHGNGSVSVSFTRNGNPFRAHMERQRGLKNMNTYQMPEAVDNSGKSEAWKRRRRAESDNQFQGQPPPQRTGSNGLRITDPNSLGILGAGPSDKRFANEKPYRTQPGGFPSRQGFSSGIK* 1760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02646 1759 MobiDBLite consensus disorder prediction 1215 1248 - -
Phac8g02646 1759 SUPERFAMILY Chromo domain-like 419 503 IPR016197 -
Phac8g02646 1759 SUPERFAMILY Chromo domain-like 515 591 IPR016197 -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 222 256 - -
Phac8g02646 1759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 949 1100 IPR001650 -
Phac8g02646 1759 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 860 1090 - -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 274 291 - -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 196 214 - -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 1699 1719 - -
Phac8g02646 1759 Gene3D - 620 859 IPR038718 -
Phac8g02646 1759 Gene3D - 409 536 - -
Phac8g02646 1759 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 191 1689 - -
Phac8g02646 1759 Coils Coil 1089 1109 - -
Phac8g02646 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 423 511 IPR000953 -
Phac8g02646 1759 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 759 768 IPR002464 -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 393 426 - -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 1 426 - -
Phac8g02646 1759 CDD CD1_tandem 421 501 - -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 126 162 - -
Phac8g02646 1759 SMART helicmild6 975 1059 IPR001650 -
Phac8g02646 1759 Pfam Domain of unknown function (DUF4208) 1536 1628 IPR025260 -
Phac8g02646 1759 Gene3D - 860 1090 IPR027417 -
Phac8g02646 1759 Coils Coil 1143 1163 - -
Phac8g02646 1759 SMART DUF4208_2 1524 1629 IPR025260 -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 311 339 - -
Phac8g02646 1759 SMART chromo_7 422 504 IPR000953 -
Phac8g02646 1759 SMART chromo_7 534 593 IPR000953 -
Phac8g02646 1759 Pfam Helicase conserved C-terminal domain 946 1059 IPR001650 -
Phac8g02646 1759 CDD CD2_tandem 534 590 - -
Phac8g02646 1759 CDD SF2_C_SNF 935 1070 - -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 1670 1759 - -
Phac8g02646 1759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 641 813 IPR014001 -
Phac8g02646 1759 Gene3D - 1356 1471 - -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 105 125 - -
Phac8g02646 1759 FunFam Photoperiod-independent early flowering 1 599 873 - -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 1684 1698 - -
Phac8g02646 1759 Pfam Chromo (CHRromatin Organisation MOdifier) domain 537 591 IPR023780 -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 1633 1658 - -
Phac8g02646 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 853 1135 IPR027417 -
Phac8g02646 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 850 IPR027417 -
Phac8g02646 1759 SMART ultradead3 625 825 IPR014001 -
Phac8g02646 1759 FunFam protein CHROMATIN REMODELING 5 isoform X2 538 590 - -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 1220 1248 - -
Phac8g02646 1759 Gene3D - 538 590 - -
Phac8g02646 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 536 600 IPR000953 -
Phac8g02646 1759 Pfam SNF2-related domain 648 917 IPR000330 GO:0005524|GO:0140658
Phac8g02646 1759 MobiDBLite consensus disorder prediction 366 392 - -
Phac8g02646 1759 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02646 Phac-Chr8 35678298 35696642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02646 651 1086 RAD5 or RAD16-like Gene Family AT1G02670 25.198 1.18e-32 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac8g02646 SNF2_N 2.4e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02646 K11367 - gmx:100808039 3090.44