Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01492 ATGGCCAAGAACATAGAAAAAACCACAGTGGTTTTTTTAGAAAAAGAAGATGAAGAAGAACCCGCCGAAGAATGGTGTTTTGGATGCAAGGATGGTGGGCAAATGATCATCTGTGATCACCCGAATTGTGGGAAAGTTTATCACCCTGATTGTGTTGGAAAGGATGCAGCTTTTTTTGACATTGTAAAATCTTGGTTTTGTGGTAGACATGCTTGTTTCCAATGCAATGAACCTTCAAAGTTTTATTGCCTTGCTTGTCCAATTGGTGTGTGCAGAAAATGCTTTGCCGCCTCAGAAGAATTTACTGTTGTTAGAGGGGTAAAAGGCTTATGCATGGACTGTTGGAAGCTAATGGAGATTGTAGAACAAAATTTAGACCATGACTCAAATGGGAACAAAATAGCCTTGAATGACAGGGAAACATACGAATGCCTATTCAAGGAATATTGGGAAATTATTAAGGCAAAAGAAAGATTGACCAGTGAGGACGTTTTTTCTGCACAGCCAGATTTCAGAACTTGTAAACCTTTTCAATATCATAAAAAAAATAGGAAAGGTGAAGAGGAAGAAGTACAAAATGAGCTAAAAGAAGGATTGACAAGTGATGATATTTTTTCTGCAAGCCTGGACTACAAAAAGTTTGAACCTTTATTACATCATAAAAAAGTTAGTAAAACTGAAGAAGAAGTTCAGAATGAGGTAAAAGAAGGATTGACGGGTGATGATATTTTTGCTGCACAGACTGGCTTCAAAAAGTTTAAAGGTTTTCTGCACCATAAAAAAATTAGTAAAGTAGAAGAAGAAGAAAGCGAAGAAGAAGAAAGCGAAGAAGAAGAAAGCGAAGAAGAAGAAGGAGAAGCAGAAGAAAGTGAAGAAGGAGAAGAAGAAGAAGAAAGTGAAGAAGAAGAAGAAAATGATTTGATGTCATGGACTAGAGATGAAGATAGTAAGTCAGCTCTCCAGTCAGCCAAACGGAAAAGGAGCAATTCAGAGGAGTTTGTGGGATGGGGATCAAAACCTCTCATTAGCTTCCTTGCATCCATTGGGAAGCATGAAACTGAACCATTAACCAAATGGGCTGTCAATTCTCTCATACATGAATACATCAATGAGAAAAGTCTTGACCACCCTAGAGACAAGGGGAAGTTCCTCCCTGATGAAAGGTTGTTTCCTGTGTTTAGAAAGAAAGTTGTCTCAAAAAGGGATATATATTATCTACTTGGGTTTCACTTTGCCAAGAAAATGGATGATCCATCTGAGGATAAAAACAATGTTCAAATCAATAACAGTTCACTGGACAAGCATCCCAATGCTAAGAAAATATGTGGAAGCAGATTGTCAAGCTTAATTGGAAAACCTCCATTGAGAAAGGGGGATTATTTTATAAAGCATAGCCAATTTGCATCCATTAATGCCTACAATATAAAGCTCATTTATCTAAAACGAAGTTTGGTGCTAGAGTTATCAAAACAGCCTGAAAGTTTTTTGGGTAAGATTGTTGGAACTTTTGTCCGAGTTAGAATGGATTCCAATGATTCTAGACAAGGGAAGTCTTACCATCTGGTGAGAGTTTTAGGTGTTGAATTTGATGAAATGCCAAATAGAATTCTCTTGCAAGTTTCCTTAATGCCTAAGGCCATTCCCATTTCAGAGCTCTCCGATGAAGATTTCACAGAGCAAGAATGTGAGGATTTGCAGCAAAAAGTGAAAACCAGCTTGCTCTCAAAATTAACTGTTGCTGAGCTTCAAGAAAAGGCTGAAAGTCTTCACGAAGATATAACAAAACATAGCATCACAACTCGCCTTGTCCATTTGCAAAATCAAATTGACCGGGCAAATCTTAGAGGACGAACTAGAGAAAAAATTGCATTACTTGAGGAAAGAGAACGACTTGAACAATCATGGAAGCAAGAACAACTCTTAAAGAGCGTGCCTTCAGTTCGTGCAGAGCTTATTGAAGCAAAATGTGGTGATTCTGAAGATGAACAAGATACAAATACACAGCTCTAG 2010 0.3776 MAKNIEKTTVVFLEKEDEEEPAEEWCFGCKDGGQMIICDHPNCGKVYHPDCVGKDAAFFDIVKSWFCGRHACFQCNEPSKFYCLACPIGVCRKCFAASEEFTVVRGVKGLCMDCWKLMEIVEQNLDHDSNGNKIALNDRETYECLFKEYWEIIKAKERLTSEDVFSAQPDFRTCKPFQYHKKNRKGEEEEVQNELKEGLTSDDIFSASLDYKKFEPLLHHKKVSKTEEEVQNEVKEGLTGDDIFAAQTGFKKFKGFLHHKKISKVEEEESEEEESEEEESEEEEGEAEESEEGEEEEESEEEEENDLMSWTRDEDSKSALQSAKRKRSNSEEFVGWGSKPLISFLASIGKHETEPLTKWAVNSLIHEYINEKSLDHPRDKGKFLPDERLFPVFRKKVVSKRDIYYLLGFHFAKKMDDPSEDKNNVQINNSSLDKHPNAKKICGSRLSSLIGKPPLRKGDYFIKHSQFASINAYNIKLIYLKRSLVLELSKQPESFLGKIVGTFVRVRMDSNDSRQGKSYHLVRVLGVEFDEMPNRILLQVSLMPKAIPISELSDEDFTEQECEDLQQKVKTSLLSKLTVAELQEKAESLHEDITKHSITTRLVHLQNQIDRANLRGRTREKIALLEERERLEQSWKQEQLLKSVPSVRAELIEAKCGDSEDEQDTNTQL* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01492 669 MobiDBLite consensus disorder prediction 263 324 - -
Phac6g01492 669 SMART PHD_3 25 71 IPR001965 -
Phac6g01492 669 Coils Coil 258 300 - -
Phac6g01492 669 SUPERFAMILY FYVE/PHD zinc finger 16 80 IPR011011 -
Phac6g01492 669 Gene3D SWIB/MDM2 domain 322 421 IPR036885 -
Phac6g01492 669 SMART rtf1 469 571 IPR004343 GO:0003677
Phac6g01492 669 SUPERFAMILY Plus3-like 472 592 IPR036128 GO:0003677
Phac6g01492 669 ProSitePatterns Zinc finger PHD-type signature. 26 86 IPR019786 -
Phac6g01492 669 Gene3D - 471 591 IPR036128 GO:0003677
Phac6g01492 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 116 IPR013083 -
Phac6g01492 669 Pfam SWIB/MDM2 domain 346 409 IPR003121 -
Phac6g01492 669 CDD SWIB-MDM2_like 336 411 - -
Phac6g01492 669 ProSiteProfiles SWIB/MDM2 domain profile. 330 413 IPR003121 -
Phac6g01492 669 MobiDBLite consensus disorder prediction 268 309 - -
Phac6g01492 669 CDD PHD5_NSD 25 70 - -
Phac6g01492 669 ProSitePatterns Zinc finger RanBP2-type signature. 65 86 IPR001876 -
Phac6g01492 669 ProSiteProfiles Plus3 domain profile. 469 594 IPR004343 GO:0003677
Phac6g01492 669 PANTHER OS01G0884500 PROTEIN 48 663 IPR045894 -
Phac6g01492 669 MobiDBLite consensus disorder prediction 310 324 - -
Phac6g01492 669 Pfam Plus-3 domain 474 569 IPR004343 GO:0003677
Phac6g01492 669 Coils Coil 579 599 - -
Phac6g01492 669 SUPERFAMILY SWIB/MDM2 domain 326 415 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01492 Phac-Chr6 17053512 17058035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01492 13 77 PHD Transcription Factor Family AT3G14980 33.846 7.71e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phac6g01492 Plus-3 4.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01492 - - pvu:PHAVU_006G105100g 1238.79