Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00032 ATGAAAGGGAAGGGCAGAGAATTTATAGATTCAGCATCTTCATCGGTGCTCTCAAACGCACTTCAGCAGCGTCTCCAGTTCATTCTGCAGACCCGTCCGGAGTGGTGGGTGTATGCCATATTCTGGCAAGCCACCAAAGAAAGCGACTCCCGTCTCACTCTAGAATACAGCGACGGCTTCTTTATGGGTTCAAAGGGCAGAGAGGGAACGGAAGTCAGAATGTCGAAGGAGCAAACGAGGAATCACGTTAACGATATCGAGTGGTTCTACAGGGTGTCGCAAACTCGGTCCTATGCCGCCGGGGACGGTGTGGTCGGGTGTGCCTACGGGTCGGGGGTGGATGTTTGGTTGAGCGGAGTGAACGAGTTTGAAGTGAACGAGTGTGACGAGAGAGTAGGGGAAGCACGAAGGCACGGGATTCAGACTTTAGTGTGCGTGTCGGTGGCACGTGGGATCCTTGAGCTGGGTTCGCATGAGGTGCTGAAGCTGGATTATGGGGTTCTGCAAATGGTGAAATCGGTGTTTGAGGAGCGGGAGAGTGGGAGTGAGAATCCGGTGCGCAAGCGGTGGATGGTGGTTCCGGGGAAGGAGAAAGAGAAAGAGAGGAGAAGAGAGTTGGAGGGATCATCGACGGACTCCTCAGGGCCTTCTGATCATGATGCGGAGGCTCTTTTGGCCTTTGTGGAAGCCAACAACGGCGTTCCCATGATGGGGAGAAGGGCGGGGAGGGAACGTGAGACGCTTCCCGTAAATCACGTGGAGGCCGAGAGGCAGCGGCGAGAGAAGCTGAATCAGAGATTCTACGCTCTTCGCTCCGCCGTCCCTAACGTCTCTAAGATGGACAAGGCCTCCCTGCTTTCGGACGCCGTTGATTATATCAATGAACTGAAGGCCAAAATCAGCCAACTCCAGTCTGCGTTGGAGGCAGAACCAGAACCAGAAGCACAAGCACAAGCACAACCCTCCTCTGCAACTACTGATATGAGAGTGGAAGTCCAGATGTTGGGGTCGGAGGCCATGATAAGGGTGCAGAGCCTGAACGTTAACCACCCCTGGGCTCGGTTAATGGATGCTCTGAGGGACGTGAATTTGGAAATTCTGCATGCCACAATCTCCAACATCAAAGAGATGATGCTGCAAGACGTGGTTGTTAGGGTTCCCCATGACCTCATGACCCAAGAGGCCCTCCAAACTGCTATTATGCGCAGACTCTGA 1215 0.5383 MKGKGREFIDSASSSVLSNALQQRLQFILQTRPEWWVYAIFWQATKESDSRLTLEYSDGFFMGSKGREGTEVRMSKEQTRNHVNDIEWFYRVSQTRSYAAGDGVVGCAYGSGVDVWLSGVNEFEVNECDERVGEARRHGIQTLVCVSVARGILELGSHEVLKLDYGVLQMVKSVFEERESGSENPVRKRWMVVPGKEKEKERRRELEGSSTDSSGPSDHDAEALLAFVEANNGVPMMGRRAGRERETLPVNHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVDYINELKAKISQLQSALEAEPEPEAQAQAQPSSATTDMRVEVQMLGSEAMIRVQSLNVNHPWARLMDALRDVNLEILHATISNIKEMMLQDVVVRVPHDLMTQEALQTAIMRRL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00032 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 296 IPR011598 GO:0046983
Phac6g00032 404 PANTHER MYC 17 403 IPR045084 GO:0003700|GO:0006355
Phac6g00032 404 SMART finulus 253 302 IPR011598 GO:0046983
Phac6g00032 404 MobiDBLite consensus disorder prediction 195 219 - -
Phac6g00032 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 314 IPR036638 GO:0046983
Phac6g00032 404 Pfam Helix-loop-helix DNA-binding domain 251 296 IPR011598 GO:0046983
Phac6g00032 404 MobiDBLite consensus disorder prediction 195 209 - -
Phac6g00032 404 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 21 175 IPR025610 -
Phac6g00032 404 Gene3D - 241 310 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00032 Phac-Chr6 447716 449368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00032 13 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.507 7.08e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac6g00032 bHLH-MYC_N 6.4e-33 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00032 - K13422 pvu:PHAVU_004G090300g 755.747