Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03238 ATGTCCTCCTCAAGGCCTAGCCAAACATCCAGCAATAATTCTGGCAGATCAAGGTCATCGAGACGCAGTGCTAGGGTTCTTGCTCAGACAACTTTAGATGCAAAACTGCATGCAACTTTTGAGGAATCAGGTAGTTCTTTTAACTACTCCAATTCAGTGAGATTGTCTTCCGGCACAGGCACTGTCAGTGGTGATCATCAAACAAGGTCTGATGGAGTAACAACTGCTTACCTCCATCAGTTACAGAAAAGCAAGCTTATCCAACCATTTGGGTGCTTGCTGGCCTTAGATGAGAAAACATGTAAGGTCATTGCTTATAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGCCATGCTGTTCCCAGTGTTGGTGAACACCCTGGTCTTGGCATTGGCACCGACATACGAACTATTTTCACTGCCCCGAGTTCTACTTCTATTCAGAAGGCACTAGGATTTGGGGAGGTTTCACTTCTTAACCCCATTCTAGTTCATTGCAAGTCCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACCGGTAGTGTGATCATTGATTTTGAGCCGGTCAAGCCTCATGAAGTTCCCATGACTGCAGCAGGTGCCCTGCAATCCTATAAGTTTGCAGCTAAAGCAATAACTAGATTGCAATCCTTGCCTAGTGGGAGCATGGACACTCTGTGTGACACAATGGTTCGAGAGGTTTTTGAACTCACAGGTTATGATAGAGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAAGTGATTGCTGAAGTGAAAAGGCCAGGCCTAGAGCCATATCTGGGGTTGCACTACCCAGCAACTGATTTTCCTCAGGCCACACGTTTTTTGTTTATGAAGAACAAGGTGCGTATGATAGTTGATTGTCGTGCAAAGCATGTGAAGGTGCTTCAGGACAAAAATATTCCATTTGAATTAACTTTGTGTGGATCAACCTTGAGGGCTGCTCATAGTTGCCACTTGCAGTACATGCAAAACATGAATTCTAGTGCTTCCTTGGTTATGGCGGTTGTAGTCAATGACAATGATGAAGATGGGGATAGTTCTGATGCTGTTCAGCCACAGAAGAGAAAGAGACTATGGGGTTTAGTAGTTTGCCATCACTCTACTCCCAGGTTTGTTCCTTTCCCTCTCAGGTATGCTTGCGAATTCCTGGCTCAGGTATTTGCCATCCATGTGAACAAAGAACTTGAGTTAGAGTATCAGATTGTTGAGAAGAATATCCTGAGGACTCAAACACTTTTGTGTGATATGCTGATGCGAGATGCACCCCTGGGTATCGTATCACAGAGTCCTAATATAATGGATCTTGTGAAGTGCGATGGTGCAGCACTGTTGTATAAAAACAAGGTATGGAGATTAGGGGTAACACCAAGTGAATCCCAGATAAGAGAGATAGCTTTGTGGCTGTCTGAATGTCACAGGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGCTTCCCAGGGGCTGCTACTCTTGGTGATATAACTTGTGGAATGGCAGCTGTCAGAATAGCTTCCAAAGATATAGTTTTCTGGTTTCGATCTCACACGGCCGCAGAAATTCGATGGGGTGGTGCAAAGCATGAGCCTAGTGAAAGGGATGACGGTAGGAGGATGCATCCAAGATCTTCATTCAAGGCTTTCCTTGAAGTTATGAAGACAAGGAGTTTGCCCTGGAAGGACTATGAAATGGATGTCATTCATTCATTGCAACTAATACTGAGAAATGCATTCAAAGACACTGAGAGAATGGAGATAAGCACATATGCTATCAACACAAGATTAGGTGATTTGAAAATTGAAGGGATGCAGGATCTGGAAGCAGTGACTAGTGAGATGGTAAGGTTAATTGAGACAGCAACAGTGCCAATTTTGGCTGTTGATGTAAATGGGATGGTCAATGGATGGAATAAAAAAATTGCTGAGTTGACATGTCTTCCAGTTGAGCAAGCTATTGGGAAGCATTTACTCACTCTTGTTGAAGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGGACATGGCACTGCAGGGTGAGGAAGAGAAAAATGTGCAATTTGAGATCAAAACACACGATTTGAAGATTGATTCTGGTCCTATCAGCTTGGTGGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACAGTGATGGACAAATTCACCAGAATTGAAGGAGACTACAAGGCAATTGTGCAGAACCGAAACCCATTGATCCCTCCAATATTTGGCACAGATGAATTTGGGTGGTGTTGTGAATGGAATTCAGCTATGACAAAATTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGGGAGGTTTTTGGGACACAAATAGCTTATTGTCGTCTAAGGAATCAAGAAGCTGTTGTTAACTTCAGCATTGTAGTTAACAAAGCCATGGCTGGTTTGGAAACGGAGAAGGTTCCTTTTAGTTTCTTTACTCGTGATGGGAAACACGTAGAATGTCTGCTTTCTGTGAGTAAGAAGTTGGATGCAGAGAGTGTAGTTACTGGAGTCTTCTGCTTCTTGCAACTAGCTAGTCCAGAGCTGCAACAAGCATTACACATTCAGCACCTATCTGAACAAACTGCTTCCAAAAGACTGAAAGCTTTAACTTATTTGAAAAGGCAAATCCAAAGCCCTTTATATGGGATTGTTTTCTCCCGGAAATTGTTAGAAGGTGCTGAGTTGGGAGCTGAACAAAAACAATTTCTGCAAACGGGTGGTCGGTGTGAACGCCAGCTTAGCAAAGTCCTTGACTCAGATCTTGACAGCATCATTGATGGCTACCTGGATTTGGAGATGGTTGAATTTACTCTGCATGAAGTGTTAGTTGCCTCCTTAAGTCAAGCCATGACAAAAGGTAATGCAAAAGGTATCCGATTAGTGAGTGATGTTGAAGAGCAGATCACAAGAGAAACCTTGTACGGTGATGGTCTCAGGCTCCAGCAGGTCTTAGCCGACTTTTTATTGATTTCCATCAATTTCACACCAACTGGAGGTCAGATTGTTGTAGCAGCCTCATTATCAAAACAGCAGTTAGGGAAACTAGTCCATCTTGCTAATTTGGAGCTCAGCATAACACATGAGGGTTTTGGGGTTCCAGAAACATTGCTGAACCAAATGTTTGGACGTGATGGTGATGAATCTGAGGAGGGTATCAGCATGCTGATTAGCAGAAAGCTGCTAAAGCTGATGAATGGAGAAGTGCGTTATATAAGGGAAGCAGGCAATTCATCTTTCATCTTATCAGTTGAACTTGCCGCAGCTCATAAATCCAACAGTTAA 3393 0.4312 MSSSRPSQTSSNNSGRSRSSRRSARVLAQTTLDAKLHATFEESGSSFNYSNSVRLSSGTGTVSGDHQTRSDGVTTAYLHQLQKSKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGEHPGLGIGTDIRTIFTAPSSTSIQKALGFGEVSLLNPILVHCKSSGKPFYAIIHRVTGSVIIDFEPVKPHEVPMTAAGALQSYKFAAKAITRLQSLPSGSMDTLCDTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPGLEPYLGLHYPATDFPQATRFLFMKNKVRMIVDCRAKHVKVLQDKNIPFELTLCGSTLRAAHSCHLQYMQNMNSSASLVMAVVVNDNDEDGDSSDAVQPQKRKRLWGLVVCHHSTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIVEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIREIALWLSECHRDSTGLSTDSLSDAGFPGAATLGDITCGMAAVRIASKDIVFWFRSHTAAEIRWGGAKHEPSERDDGRRMHPRSSFKAFLEVMKTRSLPWKDYEMDVIHSLQLILRNAFKDTERMEISTYAINTRLGDLKIEGMQDLEAVTSEMVRLIETATVPILAVDVNGMVNGWNKKIAELTCLPVEQAIGKHLLTLVEDFSVDRVKKMLDMALQGEEEKNVQFEIKTHDLKIDSGPISLVVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNSAMTKLTGWKREEVMDKMLLGEVFGTQIAYCRLRNQEAVVNFSIVVNKAMAGLETEKVPFSFFTRDGKHVECLLSVSKKLDAESVVTGVFCFLQLASPELQQALHIQHLSEQTASKRLKALTYLKRQIQSPLYGIVFSRKLLEGAELGAEQKQFLQTGGRCERQLSKVLDSDLDSIIDGYLDLEMVEFTLHEVLVASLSQAMTKGNAKGIRLVSDVEEQITRETLYGDGLRLQQVLADFLLISINFTPTGGQIVVAASLSKQQLGKLVHLANLELSITHEGFGVPETLLNQMFGRDGDESEEGISMLISRKLLKLMNGEVRYIREAGNSSFILSVELAAAHKSNS* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03238 1130 PRINTS Phytochrome signature 739 759 IPR001294 GO:0006355|GO:0009584
Phac1g03238 1130 PRINTS Phytochrome signature 627 643 IPR001294 GO:0006355|GO:0009584
Phac1g03238 1130 PRINTS Phytochrome signature 556 574 IPR001294 GO:0006355|GO:0009584
Phac1g03238 1130 PRINTS Phytochrome signature 140 162 IPR001294 GO:0006355|GO:0009584
Phac1g03238 1130 PRINTS Phytochrome signature 438 458 IPR001294 GO:0006355|GO:0009584
Phac1g03238 1130 PRINTS Phytochrome signature 719 736 IPR001294 GO:0006355|GO:0009584
Phac1g03238 1130 PRINTS Phytochrome signature 325 346 IPR001294 GO:0006355|GO:0009584
Phac1g03238 1130 PRINTS Phytochrome signature 240 259 IPR001294 GO:0006355|GO:0009584
Phac1g03238 1130 PRINTS Phytochrome signature 646 661 IPR001294 GO:0006355|GO:0009584
Phac1g03238 1130 PRINTS Phytochrome signature 523 542 IPR001294 GO:0006355|GO:0009584
Phac1g03238 1130 SMART HKATPase_4 1012 1124 IPR003594 -
Phac1g03238 1130 Gene3D PAS domain 81 328 - -
Phac1g03238 1130 Gene3D - 206 569 IPR029016 -
Phac1g03238 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 914 1108 - -
Phac1g03238 1130 CDD PAS 635 741 IPR000014 -
Phac1g03238 1130 SMART gaf_1 225 418 IPR003018 GO:0005515
Phac1g03238 1130 CDD PAS 768 879 IPR000014 -
Phac1g03238 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 225 398 IPR016132 -
Phac1g03238 1130 ProSiteProfiles Histidine kinase domain profile. 908 1126 IPR005467 -
Phac1g03238 1130 Coils Coil 405 425 - -
Phac1g03238 1130 Gene3D PAS domain 619 755 - -
Phac1g03238 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1012 1122 IPR003594 -
Phac1g03238 1130 ProSiteProfiles PAS repeat profile. 757 809 IPR000014 -
Phac1g03238 1130 Pfam PAS fold 76 192 IPR013654 GO:0006355
Phac1g03238 1130 FunFam Phytochrome 620 751 - -
Phac1g03238 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 963 1117 IPR036890 -
Phac1g03238 1130 Pfam GAF domain 226 408 IPR003018 GO:0005515
Phac1g03238 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 630 737 IPR035965 -
Phac1g03238 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 194 IPR035965 -
Phac1g03238 1130 Gene3D - 963 1129 IPR036890 -
Phac1g03238 1130 Gene3D - 413 586 IPR043150 -
Phac1g03238 1130 PIRSF Phytochrome_conventional 1 1130 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Phac1g03238 1130 Gene3D PAS domain 770 882 - -
Phac1g03238 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 877 IPR035965 -
Phac1g03238 1130 SUPERFAMILY GAF domain-like 416 594 - -
Phac1g03238 1130 MobiDBLite consensus disorder prediction 1 26 - -
Phac1g03238 1130 SUPERFAMILY GAF domain-like 205 405 - -
Phac1g03238 1130 ProSiteProfiles PAS repeat profile. 624 694 IPR000014 -
Phac1g03238 1130 Pfam Phytochrome region 421 596 IPR013515 GO:0006355|GO:0009584
Phac1g03238 1130 Pfam PAS fold 627 741 IPR013767 GO:0006355
Phac1g03238 1130 Pfam PAS fold 757 879 IPR013767 GO:0006355
Phac1g03238 1130 NCBIfam PAS domain S-box protein 631 747 IPR000014 -
Phac1g03238 1130 SMART pas_2 626 692 IPR000014 -
Phac1g03238 1130 SMART pas_2 756 825 IPR000014 -
Phac1g03238 1130 FunFam Phytochrome 413 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03238 Phac-Chr1 39695634 39701901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03238 1 1127 Histidine Kinase Gene Family AT1G09570 75.465 0.0 1779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03238 K12120 - gmx:100791098 1969.51