Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5559g00002 ATGGCGGAACAGAATCAGCATATAATATTGGCTATATCGGACAATGATGAGAAGAAGATCATTCGTAGGGAAGTTGAAAAACAAAGGAGGACACAAATGTCTATTCTATGTGCATCTCTCCGCTCTTTGCTCCCTTTTGAACTCATCAAGGGAAAGCGTTCGGCATCAGATCACATAGGCGAGGCAGTAAATTATATCCATTTTTTAAAGCAAAACATTAATGCTCTCGAAATCAAGAGAGATAGGCTCAAGCAAATGCTTAATTCAAGTTTAGTTGAAGCTGGAAGTGAAGCAGATCATTCAGGAGCAGCAGTGAAGTGTGTGAACACGATCAATCTCATTCCAGGGGGCGTGGAAGTTGCGATATGTAGTGGTACTTTCGAGGAGGGGAATTCGCCTAATTTATCATACTTCATGGAAATATTGCTTCAAGAAGGATGTGATGTTGTTAGCTGCGTTTCGACCCATGCTAATGGGAGGATATTTCATACTATTAAGTCTGAGGTGGAGGACTTGTCACGCCTTGATCTTGCTAAGCTGCAACACAAACTGGATCATTCAATCTTGTTGTCAAGTGATGAGTTGTACTTTCAGATTTCACCAGATAATTACTATTCCCTACCAATCGAAACAACCCCACAAAATCAGATCTTCCATGATCCTGTGATGGATGGCAGTGGTCTAATTCCATGTACAAGTCAAATGGGCAACCAGCAACAAAAGTTACCTGCTTGGGGAAGAGAAGTTCATAAGATTACCACCATAGATGAAAACAAGAAGTGGATGCATAGAGAGACCGAAAAACAAAGAAGGCAAGAAATGACCAGGCTTTGCACCACCTTTAGATCTCTTCTGCCTCTTGAATATATTAAGGGAAAGCGCTCAATTTCTGATCACATGCATGAGGGTACGAATTACATCAAGTACCTTCAACATAAGTTGAAACACTTGCGAGCCAAGAAGGATGAGTTCATGAAGTTGTCTAATTTGACTCCTGTTGGTTCTGAGAGTGGAAGCTTTACTACCCATAATCTTCCAATATGTGTCATTGTTCATCCTTGTTCAGAAGGTGTTCAAATTAAGTGTAGTTATAGCTTCAGGAAATATGTGTTTCCTTTGTCGAGAGTGCTAGACATAGTACTTAAAGAAGGGCTTGATGTGGTCAACTGTACTTCCACCAAAACAGATGACAGGTTGCGCAATATCCACCACAAGGACGCTATTTAA 1227 0.4075 MAEQNQHIILAISDNDEKKIIRREVEKQRRTQMSILCASLRSLLPFELIKGKRSASDHIGEAVNYIHFLKQNINALEIKRDRLKQMLNSSLVEAGSEADHSGAAVKCVNTINLIPGGVEVAICSGTFEEGNSPNLSYFMEILLQEGCDVVSCVSTHANGRIFHTIKSEVEDLSRLDLAKLQHKLDHSILLSSDELYFQISPDNYYSLPIETTPQNQIFHDPVMDGSGLIPCTSQMGNQQQKLPAWGREVHKITTIDENKKWMHRETEKQRRQEMTRLCTTFRSLLPLEYIKGKRSISDHMHEGTNYIKYLQHKLKHLRAKKDEFMKLSNLTPVGSESGSFTTHNLPICVIVHPCSEGVQIKCSYSFRKYVFPLSRVLDIVLKEGLDVVNCTSTKTDDRLRNIHHKDAI 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5559g00002 408 Gene3D - 250 331 IPR036638 GO:0046983
Mupr5559g00002 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Mupr5559g00002 408 CDD bHLH_AtORG2_like 18 85 - -
Mupr5559g00002 408 SMART finulus 264 316 IPR011598 GO:0046983
Mupr5559g00002 408 SMART finulus 23 75 IPR011598 GO:0046983
Mupr5559g00002 408 FunFam Transcription factor bHLH126 250 337 - -
Mupr5559g00002 408 Coils Coil 66 93 - -
Mupr5559g00002 408 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 247 403 - -
Mupr5559g00002 408 Gene3D - 16 95 IPR036638 GO:0046983
Mupr5559g00002 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 88 IPR036638 GO:0046983
Mupr5559g00002 408 CDD bHLH_AtORG2_like 259 329 - -
Mupr5559g00002 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 310 IPR011598 GO:0046983
Mupr5559g00002 408 Pfam Helix-loop-helix DNA-binding domain 260 311 IPR011598 GO:0046983
Mupr5559g00002 408 Pfam Helix-loop-helix DNA-binding domain 22 69 IPR011598 GO:0046983
Mupr5559g00002 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 326 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5559g00002 Mupr-Chr5559 30368 42375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5559g00002 256 399 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 44.595 4.45e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr5559g00002 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5559g00002 - - gmx:100803786 331.257