Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2558 ATGTCTTTGCAGAAGCTGAAGCTATCAACACCAAGTTCAATTTTTGAAGAAAACCCATCAACCAAAACAAAGAGAAAACCCAAAAGAAAGCTTGTTCGAATCATAATCACCGACCACGACGCCACTGATTCCGACTCCTCCGGCGACCAAGAGAGAGAGAAAAACAACCAAACAACAAAACGAAGAAAACCCAAAAGAGAAATCCTTCATATTAACATGCACTGTCCCGTACCAAATTCTTCTCTCTCATTTTCTTCTCCTTCGTCATCGTCTTCTCTTGTTTCGCCGGAGAAAACCCACAAAAAGCTCAATAGAGTGAGGAGACCCAGAAAACCACCAACCTCCGTCGTCACGCGCCGCCACAGCAATTTCCGCGGGGTAAGACAACGGCCTTGGGGAAAATGGGCTGCGGAGATCCGTGACCCGATCCGAAGAAAACGTCTATGGCTGGGAACTTTTTCTACGGCGGAGGAAGCCGCCGCTGAGTACGACAGAGTGGCAGTGATGTTGCATGGTTCAAACGCGGTTACAAACTACCCAATAACTCAGGTGGAGGTTAAAACGGAGATCGAAAAGGATTTTGAAGTGACGCCGCCGGTGAGCAGCGGAAACAGCGACAGAGGTGGTTACTCCGACGCTTTGTCGTCGCCAACGTCTGTATTACCCTACGACTGTGATTCGACGCCGTTTGACGGTTTCCGTTACGTAGACGTGGACGCTTTTGGGTTTCACATCGACGCGCCGTTAAGTTTACCAGAAGTTAACGTTCCGCTGACATGTCATCAGAAGTTGGAAAAAGAAGAGAAGTTTGAAGAGTTTGATCTTGACGAGTTTATGACGTGGCCGTATTGA 852 0.48 MSLQKLKLSTPSSIFEENPSTKTKRKPKRKLVRIIITDHDATDSDSSGDQEREKNNQTTKRRKPKREILHINMHCPVPNSSLSFSSPSSSSSLVSPEKTHKKLNRVRRPRKPPTSVVTRRHSNFRGVRQRPWGKWAAEIRDPIRRKRLWLGTFSTAEEAAAEYDRVAVMLHGSNAVTNYPITQVEVKTEIEKDFEVTPPVSSGNSDRGGYSDALSSPTSVLPYDCDSTPFDGFRYVDVDAFGFHIDAPLSLPEVNVPLTCHQKLEKEEKFEEFDLDEFMTWPY* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2558 283 SUPERFAMILY DNA-binding domain 122 181 IPR016177 GO:0003677
Mtr5g2558 283 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Mtr5g2558 283 MobiDBLite consensus disorder prediction 101 115 - -
Mtr5g2558 283 MobiDBLite consensus disorder prediction 76 97 - -
Mtr5g2558 283 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 22 227 - -
Mtr5g2558 283 MobiDBLite consensus disorder prediction 33 62 - -
Mtr5g2558 283 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Mtr5g2558 283 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 227 - -
Mtr5g2558 283 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Mtr5g2558 283 MobiDBLite consensus disorder prediction 1 119 - -
Mtr5g2558 283 MobiDBLite consensus disorder prediction 1 18 - -
Mtr5g2558 283 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Mtr5g2558 283 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Mtr5g2558 283 CDD AP2 122 182 IPR001471 GO:0003700|GO:0006355
Mtr5g2558 283 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Mtr5g2558 283 PIRSF PTI6 1 283 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2558 Mtr-Chr5 33435047 33436865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2558 22 223 AP2-EREBP Transcription Factor Family AT4G27950 43.564 1.89e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g2558 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2558 K13434 - gmx:100800489 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2558 5 33435047 33436865 Mtr5g2558 5 33435047 33436865 ECH
Mtr3g1873 3 31638391 31639167 Mtr5g2558 5 33435047 33436865 PCT