Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2134 ATGGATTTCTTCAACAATTCACAAGATCCATTCAATGGTGAGTTAATGGAAGTTCTTGAACCTTTTATGAAGAGTTCTTCCATTTCTCCTTCATCACCCCCTTCTCTAAATTCACACCTCCCTTCAACTTCTTCTTCATCATCATCACCTTTTTACTCTTCTACACCCCCCTTTTTCCAACCTTCTTTCTCTCCTCAATCTTCTTCTTCTTCTTCTTCTTTTCCTCCACAGCCCAATTTCTACACAGAAAATGGTTACTGTTCATCCATGATGAATTACCAATTTCCTTCTTTAGGTAATTCATCAACTAGCCAAAATAATTTCATTGGCTTTGAACAACCACAACAACCAAATTCTGTTATTGGGCTAAACACCTTAACCCCATCTCAAATTAACCAGATCCAAGCCCAGATCCAGTTTCAACAAACCCAAAGTAACAACTCAAGCTTGAACTTTCTTGGGCCTAAGCCCATCCCAATGAAACAGCCTGGTGTACCTCCAAAGCCCACAAAGCTTTATAGAGGTGTAAGGCAAAGACATTGGGGAAAATGGGTTGCTGAGATAAGACTACCCAAGAATAGAACAAGGCTTTGGCTTGGTACTTTTGACACTGCTGAAGAAGCTGCTTTGGCTTATGATAGAGCTGCTTATAGATTAAGAGGTGATTTTGCTAGACTTAATTTCCCAAACATGAAAGACCAACAACAAGGTGGTATGTTTGGTGAGTTTAAGGTTTTGCATTCATCTATTGATGCTAAACTTGATGCTATTTGTGAGAGTTTAGGTAACAACAATAGTAGTGATAATGTCAAGAACAAGAAACAAGGGAAGGGTTCAAAGAAGAGTTTGAAGAAAGAGGTTGAAGCTCAACCTCAACCTCAACCATTGGTTGTTGTTGAAAATAATAATGATGATAACAACAATACCAATACCAACAAGGTTGTTGTTGAATGTGGTTCTTCTTTGTCTTCACATAGTGAAGGTGGTTCTGATGATTCTTCTCCACTTTCTGATCTTACTTTTGGTGAATTTGCTGAGCCACAATGGGAAAATGGTTTTGAACAATTTAATTTGCAGAAATTTCCTTCTTATGAGATTGATTGGGCTTCTCTTTGA 1116 0.3808 MDFFNNSQDPFNGELMEVLEPFMKSSSISPSSPPSLNSHLPSTSSSSSSPFYSSTPPFFQPSFSPQSSSSSSSFPPQPNFYTENGYCSSMMNYQFPSLGNSSTSQNNFIGFEQPQQPNSVIGLNTLTPSQINQIQAQIQFQQTQSNNSSLNFLGPKPIPMKQPGVPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDFARLNFPNMKDQQQGGMFGEFKVLHSSIDAKLDAICESLGNNNSSDNVKNKKQGKGSKKSLKKEVEAQPQPQPLVVVENNNDDNNNTNTNKVVVECGSSLSSHSEGGSDDSSPLSDLTFGEFAEPQWENGFEQFNLQKFPSYEIDWASL* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2134 371 SMART rav1_2 172 235 IPR001471 GO:0003700|GO:0006355
Mtr5g2134 371 MobiDBLite consensus disorder prediction 295 337 - -
Mtr5g2134 371 SUPERFAMILY DNA-binding domain 172 229 IPR016177 GO:0003677
Mtr5g2134 371 CDD AP2 171 230 IPR001471 GO:0003700|GO:0006355
Mtr5g2134 371 Pfam AP2 domain 173 221 IPR001471 GO:0003700|GO:0006355
Mtr5g2134 371 MobiDBLite consensus disorder prediction 262 341 - -
Mtr5g2134 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 370 - -
Mtr5g2134 371 MobiDBLite consensus disorder prediction 24 54 - -
Mtr5g2134 371 Gene3D AP2/ERF domain 172 230 IPR036955 GO:0003700|GO:0006355
Mtr5g2134 371 ProSiteProfiles AP2/ERF domain profile. 172 229 IPR001471 GO:0003700|GO:0006355
Mtr5g2134 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 370 - -
Mtr5g2134 371 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Mtr5g2134 371 PRINTS Ethylene responsive element binding protein signature 195 211 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2134 Mtr-Chr5 27536813 27538845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2134 70 371 AP2-EREBP Transcription Factor Family AT1G78080 48.287 1.94e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g2134 AP2 8.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2134 K09286 - gmx:732559 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2134 5 27536813 27538845 Mtr5g2134 5 27536813 27538845 ECH
Mtr5g2134 5 27536813 27538845 Mtr3g2321 3 36962291 36964115 PCT