Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0006 ATGTGCGGAATAATAAAAGGGAGTGAATGGATGAAGGGTAAAATGGTTGGATGTGGATCTTTTGGCAGTGTCCATCTAGCCATGAACAAATCCACTGGTGGACTTTTTGTGGTGAAAAAAGCGCATTCAGAGGCAGGACGTGATGCTCTGGAGAACGAGGTGAATATCCTAAATACATTAAATTCATCACCTTCACCCTATATTGTCCAATGTTTAGGGACAGATTATGATCATCAAGATAACCAACTGCATGTTTTCATGGAGTACATGTCCGGGGGTAGTTTGGCTGACGTGTCACACAAGTTTGGTGGTTCATTAAATGAAGATGTTGTTCGTGTGTATACTAGACAAATTGTGCATGGGTTATATCATCTTCACCAACATGGAATTGTACATTGTGACCTTAAGTGCAAAAACGTGCTTTTGGCCTCATCTGGGAATGTCAAACTGGCAGATTTTGGGTGTGCAAAAAGGGTAAAGAAAAACATGAACATGAACAAATCTTCATCATGTATTATTGCTAATGGTGGCACTCCTCTATGGATGGCTCCCGAAGTATTATTAATGAAGAATAATAGTAGTATTAATGATGAGAGCCGGGTTGTTGATTTTGCAGCAGCAGATATATGGTCTTTGGGATGTACTGTTATTGAAATGGCCACTGGCAGGCCTCCTTGGGTCGATGATGACCTCATTTCCATTTCAAATCCAATGGCTGCTATGTTTAAGATTGCATGTGGTGATGGGATACCTCAATTTCCAATTCACTTCTCTCAGGAGGGTTTCGATTTCTTGAGGAGGTGTTTGGTGAGAGATCCCAAAAAGAGGTCTACCGCACTGGAGTTGCTTAACCATCCATTTCTTGTTTCAACTACTTTAACTCATCACAAACACTACTCTGCTTCCTCGCCCGCATCTGTCTTGGAGGTTCATCAGTTTGAGGATACATATGATGATGATGATGACGACGACGACTCAGATGATAATGATGAATTAATAAGTCCAGCAGGAGGGAATCATTTCTTCATCACAAAAGAGCTTCTGTGCCCACAAGGAACAACAATGTGGCAACTGGAAGACAGTGCATCAGGGAATCATTGGATCACTATTAGATCAAGGTGA 1122 0.4144 MCGIIKGSEWMKGKMVGCGSFGSVHLAMNKSTGGLFVVKKAHSEAGRDALENEVNILNTLNSSPSPYIVQCLGTDYDHQDNQLHVFMEYMSGGSLADVSHKFGGSLNEDVVRVYTRQIVHGLYHLHQHGIVHCDLKCKNVLLASSGNVKLADFGCAKRVKKNMNMNKSSSCIIANGGTPLWMAPEVLLMKNNSSINDESRVVDFAAADIWSLGCTVIEMATGRPPWVDDDLISISNPMAAMFKIACGDGIPQFPIHFSQEGFDFLRRCLVRDPKKRSTALELLNHPFLVSTTLTHHKHYSASSPASVLEVHQFEDTYDDDDDDDDSDDNDELISPAGGNHFFITKELLCPQGTTMWQLEDSASGNHWITIRSR* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0006 373 MobiDBLite consensus disorder prediction 316 331 - -
Mtr2g0006 373 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 372 - -
Mtr2g0006 373 Gene3D Transferase(Phosphotransferase) domain 1 8 331 - -
Mtr2g0006 373 Coils Coil 370 373 - -
Mtr2g0006 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Mtr2g0006 373 Pfam Protein kinase domain 12 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g0006 373 SUPERFAMILY Protein kinase-like (PK-like) 8 319 IPR011009 -
Mtr2g0006 373 CDD STKc_MAPKKK 9 288 - -
Mtr2g0006 373 ProSitePatterns Protein kinases ATP-binding region signature. 16 40 IPR017441 GO:0005524
Mtr2g0006 373 SMART serkin_6 10 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g0006 373 MobiDBLite consensus disorder prediction 316 337 - -
Mtr2g0006 373 ProSiteProfiles Protein kinase domain profile. 10 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g0006 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 2 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0006 Mtr-Chr2 128754 130028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0006 10 309 MAP Kinase Kinase Kinase AT5G55090 40.196 1.60e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Mtr2g0006 Pkinase 5.4e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0006 - K20716 mtr:MTR_2g005290 756.903