Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0290 ATGTCTGCTTTTGATGACGACATCTCCAATGTTGGTGATGGAGATCGGCACGGTTGCCGAGGGGGTGAGGGAAATAACGATGACGACGAGGACGACGATGCTGGGAAACCTCCAAGGGTTGAAGGTGGAAAGAAGGGGTTCACAAAATATGGATTTGGAAAAGATATTGGAAAGGCGAAGCAAGTGGTCCTGCATCAATTCTCGAAGGCCAAGAAACAACTCCACAATAGAAGGCACAAAAAGGCTCTTCGTTCATCTTCTTCTGTGTCTGGAGCTGCTATTGTAAGCAGGGGTTCAGGTAAGATGATTCGTGGTGTTTCTGGTGCTGGGTGCTACTTCTGCTTTTCGCGCCCTCAAGTTGTGGAATCACCTAATGAGTCTCCGTCGAGCGACCCTAACGGTCCGAGTTTCACTTATGCGATGTTGATGAAAGTTGAACATTTGGAATTTCTGGGACCTCTACTTCTCCTCAACCAGAGAAGCGGTGAATAGAGGGTGTTTGCTGCAGGCAGCCGATGCTATTCGTGGCATGATGATGAAAAGTTACTGACAGTTCTTTCTGAAGTCCCTTCCTTCGTCTCAAGGTTTCCTCTTCATTGGTTGGGTCATTTTGAACCTGGTTTCTGCTCCCTCCTGCTTCTCCAGATTAGCTTAGACATTTTATTTATATTGCCAGGTGTAACGAAGGTGAAAATGTTCTCCTCAAGACCTAGCCAGTCATCCAGTAACTCGGGAAGATCAAGACATAGTGCTCGAGTTATTGCTCAGACCACTGTGGATGCAAAACTACATGCTAATTTTGAGGAGTCCGGTACCTCCTTTGACTACTCAAACTCGGTGCGCATCTCTGGTACAGTAAACGGAGAGCAGCAACCAAGATCTGACCGGGTGACAACAGCTTACCTCCACCACATACAGAAAGGCAAGCAGATCCAGCCTTTCGGGTGCTTGCTAGCCTTAGATGAGAAAACATGCAAGGTGATTGCATACAGTGAGAATGCTCCTGAAATGTTGACCCTGGTTAGTCATGCTGTGCCAAGTGTAGGTGACAATCCCGCCCTTGGCGTTGGCACCGACATAAGAACCATATTCACTGCCCCAAGTGCTTCTGCGTTGCAGAAAGCCATAGGATTTGGGGAAGTTTCACTCCTCAACCCCATTCTAGTCCATTGCAAGACCTCTGGAAAGCCCTTTTATGCAATTATCCATCGTGTGACCGGAAGTTTGATAATTGATTTTGAGCCAGTCAAGCCTTTTGAAGTTCCCATGACTGCTGCTGGTGCCCTTCAATCTTACAAGCTTGCTGCCAAAGCAATCACTAGGTTGCAATCTTTGCCTAGTGGGAGTATGGAAAGGCTATGTGATACGATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGATGACCATGGGGAAGTGATCGCTGAGATCACAAAGCCAGGTTTAGAGCCATATCTGGGTTTGCATTACCCAGCCACTGATATTCCTCAGGCTGCACGTTTTTTATTTATGAAGAACAAGGTGCGTATGATAGTAGATTGTCGTGCAAGGCATGTGAAGGTGCTTCAAGATGAAAAACTTCCATTTGAGTTAACCTTGTGTGGTTCAACCCTGAGGGCCCCTCATAGTTGCCATTTGCAGTATATGGAGAACATGAATTCCATTGCTTCCCTGGTTATGGCAGTGGTGGTCAATGATAGTGATGAAGATGCGGACAGCTCTGATGCTATGCAGCCGCAGAAGAGAAAGAGACTTTGGGGTTTGGTGGTTTGCCACAACACTACACCAAGGTTTGTTCCTTTTCCTCTTCGGTATGCTTGCGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAATAAAGAATTAGAGTTAGAATACCAAATTGTTGAGAAAAACATCCTGCGCACCCAGACACTTCTATGTGATATGCTGATGCGAGATGCACCCCTTGGTATTATATCACAGAGCCCAAATATAATGGATCTTGTGAAATGTGATGGGGCTGCCCTCTTGTATAAAAACAAGGTTTGGAGACTAGGGGTAACACCAAGTGAGTCCCAGATCCAAGAGATATCTATATGGCTCTCTGAAAACCATATGGATTCCACAGGTTTAAGTACAGATAGCCTGACCGAAGCAGGGTTACCAGGTGCTCTTGCTCTTGGTGATATAGTATGTGGGATGGCAGCTGTGAGAATATCTTCAAAAGATATGGTTTTCTGGTTTCGATCGCATACTGCGGCAGAAATTCGATGGGGTGGTGCGAAGCATGAGCCTGGTGAACAGGATGACAATAGGAGGATGCATCCAAGATCATCGTTTAAAGCTTTCCTTGAAGTTGTGAAGTCAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATCCATTCCTTGCAGTTAATTCTGAGGAACTCATGTAAAGATACAAAGAGTATGGATGTAACTACCAATGCAATTAACACAAGATTGAGCGATTTGAGGATTGAAGGGATGCAGGAACTGGAGGCAGTGACAAGTGAGATGGTTCGGCTAATTGAAACAGCAACAGTGCCAATTTTGGCAGTTGATGTTGACGGGCTGGTCAATGGGTGGAATACAAAAATTGCTGAGTTGACGGGTCTTCCGGTTGATGAAGCAATTGGGAAGCATCTACTCACACTAGTTGAGGATTCTTCGATTGATACGGTTAAGAAGATGCTGGACATGGCATTGCAAGGTGAAGAAGAGCAGAACGTCCAATTTGAGATCAAAACACATGCATCTAAGATTGATTCTGGTCCTATAAGGTTGATTGTTAATGCATGTGCAAGTAGAGACCTTAGAGACAACGTAGTGGGGGTTTGCTTCGTGGCTCAAGATATAACTGCTCAGAAGACAGTTATGGACAAATTCACTCGAATTGAAGGTGATTACAAGGCAATTGTCCAGAATCCAAGTCCATTGATCCCCCCAATATTTGGTACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCTGCGATGATCAAGTTAACTGGATGGAAGCGGGAGGATGTGATGGACAAAATGCTTTTGGGGGAGGTATTTGGAACTCATGCAGCTTGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATTTTGGAGTTGCACTTAATAAAGCCATGACTGGTTTGGAAACTGAGAAGGTTGCTTTTGGCTTTTTTGCTCGGAATGGGAAGTATGTAGAGTGCCTTCTTTCTGTGAGTAAGAAGTTGGACGGAGAGGGTACAGTTACTGGGGTTTTCTGCTTCTTGCAGCTAGCTAGCCCAGAGTTGCAACAAGCATTACATATTCAGCGGCTTTCTGAGCAGACTGCCATGAAGAGACTGAAAGCTTTAACTTATATGAAAAGGCAGATACGGAATCCTTTAGGTGGGATTGTGTTCTCCCGTAGACTGTTGGAGGGTACTGAGTTGGGAACTGAACAGAAACAACTTCTGCACACTAGTTCCCTGTGCCAGCGTCAGCTCAGCAAAGTTCTTGATGATTCTGATCTTGACTGCATCATTGATGGGTACTTGGATCTGGAGATGGTTGAATTTACTCTGCATGAAGTATTGGTTGCCTCTCTCAGTCAAGTAATGACAAAGGGCAATTCAAAGGGTATCAGAATAGTGAACGACGTGGCAGAGCATATCATGACAGAAACCTTGTATGGCGACTGTCTCAGGCTTCAACAGGTCTTAGCTGACTTCTTATCAATGTCCGTCACTTTTACGCCCTCCGGAGGTAAGGTGGTTGTTGCAGCCTCTTTAACCAAAGATCAGTTGGGACAATCCGTCCATCTTGCCAATTTGGAGCTCAGCATAACACATGCTGGAAGTGGGATTCCGGAAGCATTGCTAAACCAGATGTTTGGAAGTGATGGACAAGAATCTGAAGAGGGTGTTAGCCTGCTTATAAGTAGAAAACTGGTAAAGCTCATGAACGGGGACGTCCGTTATCTGAGGGAAGCAGGCAAATCATCCTTCATTTTAACTGTTGAACTCGCTGCAGCCCAGAAAGCGAGGGCTTAA 4068 0.4513 MSAFDDDISNVGDGDRHGCRGGEGNNDDDEDDDAGKPPRVEGGKKGFTKYGFGKDIGKAKQVVLHQFSKAKKQLHNRRHKKALRSSSSVSGAAIVSRGSGKMIRGVSGAGCYFCFSRPQVVESPNESPSSDPNGPSFTYAMLMKVEHLEFLGPLLLLNQRSGEXRVFAAGSRCYSWHDDEKLLTVLSEVPSFVSRFPLHWLGHFEPGFCSLLLLQISLDILFILPGVTKVKMFSSRPSQSSSNSGRSRHSARVIAQTTVDAKLHANFEESGTSFDYSNSVRISGTVNGEQQPRSDRVTTAYLHHIQKGKQIQPFGCLLALDEKTCKVIAYSENAPEMLTLVSHAVPSVGDNPALGVGTDIRTIFTAPSASALQKAIGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPFEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFELTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDSDEDADSSDAMQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIVEKNILRTQTLLCDMLMRDAPLGIISQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIQEISIWLSENHMDSTGLSTDSLTEAGLPGALALGDIVCGMAAVRISSKDMVFWFRSHTAAEIRWGGAKHEPGEQDDNRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNSCKDTKSMDVTTNAINTRLSDLRIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLPVDEAIGKHLLTLVEDSSIDTVKKMLDMALQGEEEQNVQFEIKTHASKIDSGPIRLIVNACASRDLRDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPSPLIPPIFGTDEFGWCCEWNPAMIKLTGWKREDVMDKMLLGEVFGTHAACCRLKNQEAFVNFGVALNKAMTGLETEKVAFGFFARNGKYVECLLSVSKKLDGEGTVTGVFCFLQLASPELQQALHIQRLSEQTAMKRLKALTYMKRQIRNPLGGIVFSRRLLEGTELGTEQKQLLHTSSLCQRQLSKVLDDSDLDCIIDGYLDLEMVEFTLHEVLVASLSQVMTKGNSKGIRIVNDVAEHIMTETLYGDCLRLQQVLADFLSMSVTFTPSGGKVVVAASLTKDQLGQSVHLANLELSITHAGSGIPEALLNQMFGSDGQESEEGVSLLISRKLVKLMNGDVRYLREAGKSSFILTVELAAAQKARA 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0290 1355 Pfam PAS fold 300 416 IPR013654 GO:0006355
Mibi02g0290 1355 Gene3D PAS domain 305 552 - -
Mibi02g0290 1355 ProSiteProfiles PAS repeat profile. 978 1033 IPR000014 -
Mibi02g0290 1355 Pfam Phytochrome region 645 820 IPR013515 GO:0006355|GO:0009584
Mibi02g0290 1355 ProSitePatterns Phytochrome chromophore attachment site signature. 549 558 IPR013516 -
Mibi02g0290 1355 Gene3D PAS domain 994 1106 - -
Mibi02g0290 1355 Gene3D - 430 793 IPR029016 -
Mibi02g0290 1355 Gene3D - 1188 1353 IPR036890 -
Mibi02g0290 1355 ProSiteProfiles PAC domain profile. 921 977 IPR000700 -
Mibi02g0290 1355 SUPERFAMILY PYP-like sensor domain (PAS domain) 995 1101 IPR035965 -
Mibi02g0290 1355 SMART HisKA_10 1125 1186 IPR003661 GO:0000155|GO:0007165
Mibi02g0290 1355 Pfam PAS fold 981 1103 IPR013767 GO:0006355
Mibi02g0290 1355 Pfam PAS fold 851 965 IPR013767 GO:0006355
Mibi02g0290 1355 SMART pas_2 850 916 IPR000014 -
Mibi02g0290 1355 SMART pas_2 980 1049 IPR000014 -
Mibi02g0290 1355 CDD PAS 992 1103 IPR000014 -
Mibi02g0290 1355 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 449 622 IPR016132 -
Mibi02g0290 1355 SMART HKATPase_4 1237 1349 IPR003594 -
Mibi02g0290 1355 PRINTS Phytochrome signature 747 766 IPR001294 GO:0006355|GO:0009584
Mibi02g0290 1355 PRINTS Phytochrome signature 464 483 IPR001294 GO:0006355|GO:0009584
Mibi02g0290 1355 PRINTS Phytochrome signature 851 867 IPR001294 GO:0006355|GO:0009584
Mibi02g0290 1355 PRINTS Phytochrome signature 549 570 IPR001294 GO:0006355|GO:0009584
Mibi02g0290 1355 PRINTS Phytochrome signature 364 386 IPR001294 GO:0006355|GO:0009584
Mibi02g0290 1355 PRINTS Phytochrome signature 963 983 IPR001294 GO:0006355|GO:0009584
Mibi02g0290 1355 PRINTS Phytochrome signature 780 798 IPR001294 GO:0006355|GO:0009584
Mibi02g0290 1355 PRINTS Phytochrome signature 662 682 IPR001294 GO:0006355|GO:0009584
Mibi02g0290 1355 PRINTS Phytochrome signature 943 960 IPR001294 GO:0006355|GO:0009584
Mibi02g0290 1355 PRINTS Phytochrome signature 870 885 IPR001294 GO:0006355|GO:0009584
Mibi02g0290 1355 FunFam Phytochrome 844 975 - -
Mibi02g0290 1355 Gene3D PAS domain 842 979 - -
Mibi02g0290 1355 FunFam Phytochrome 637 768 - -
Mibi02g0290 1355 Coils Coil 629 649 - -
Mibi02g0290 1355 SUPERFAMILY GAF domain-like 640 817 - -
Mibi02g0290 1355 TIGRFAM sensory_box: PAS domain S-box protein 855 971 IPR000014 -
Mibi02g0290 1355 SUPERFAMILY GAF domain-like 429 629 - -
Mibi02g0290 1355 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1238 1347 IPR003594 -
Mibi02g0290 1355 MobiDBLite consensus disorder prediction 1 47 - -
Mibi02g0290 1355 SUPERFAMILY PYP-like sensor domain (PAS domain) 305 417 IPR035965 -
Mibi02g0290 1355 Gene3D - 637 810 IPR043150 -
Mibi02g0290 1355 ProSiteProfiles Histidine kinase domain profile. 1132 1351 IPR005467 -
Mibi02g0290 1355 ProSiteProfiles PAS repeat profile. 848 918 IPR000014 -
Mibi02g0290 1355 CDD PAS 859 965 IPR000014 -
Mibi02g0290 1355 SUPERFAMILY PYP-like sensor domain (PAS domain) 854 961 IPR035965 -
Mibi02g0290 1355 Pfam GAF domain 449 632 IPR003018 GO:0005515
Mibi02g0290 1355 PANTHER TWO-COMPONENT HISTIDINE KINASE 1077 1339 - -
Mibi02g0290 1355 MobiDBLite consensus disorder prediction 9 24 - -
Mibi02g0290 1355 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1188 1344 IPR036890 -
Mibi02g0290 1355 SMART gaf_1 449 642 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0290 Mibi-ChrMibi02 2881180 2890860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0290 232 1352 Histidine Kinase Gene Family AT1G09570 79.947 0.0 1894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g0290 02 2881180 2890860 Mibi06g2686 06 46843635 46847760 CCT
Mibi02g0290 02 2881180 2890860 Mibi02g0290 02 2881180 2890860 ECH