Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1258 ATGAGAAGTGTAGATCCTAAGGTTAAGAAAGGAGTGTCTGTAACAGAGCACAAAGAAAACGATTCAACAAGCATCAGAAAAGGTCCATGGACGTTAGATGAGGACACCATTCTCATCAATTACATTACCACCCACGGTGAAGGTCACTGGAATTCGCTGGCACGTGCTGCAGGTTTGAGGAGAAATGGGAAAAGTTGCAGATTGAGGTGGCTAAACTACTTGCGCCCTGATGTTCGGCGTGGAAACATCACACTCCAAGAGCAGATATTGATCCTTGAACTCCATTCTCAGTGGGGTAACAGGTGGTCAAAGATTGCTCAGCATCTACCAGGAAGAACAGACAACGAAATCAAGAACTATTGGAGAACGAGGGTGATAAAGCAAGCAAAGCAGCTAAAGTGCGATGTCAACAGCAAACAATTCAGAGACACCTTGCGTCACGTGTGGATGCCACGCTTGCTGGAGCGAGTTCAGACAAACAGAACAGAGTGTGTAAAACAGAGCAACTCCCTCTCCTCCGGTTCAAGTGGAGCATACTCAGACTCATCGTCACTGGAGCTCCATGTTGGTTCAAATTCAGACCCTGAACTGTTGGGTCGTGATGTCTCGGTGGATTTAAGGCCATGTTTCAATGACCAGATGTTAGAACAGGGGAAGGGTGGTGGTGACTCGTTAGAGAATTTGTGGAATGATGAGAGTATGTGGTTTAATTTGCAGCAATTTTCTGATGGCATGGAATCAACATACAGTTAA 753 0.4568 MRSVDPKVKKGVSVTEHKENDSTSIRKGPWTLDEDTILINYITTHGEGHWNSLARAAGLRRNGKSCRLRWLNYLRPDVRRGNITLQEQILILELHSQWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDTLRHVWMPRLLERVQTNRTECVKQSNSLSSGSSGAYSDSSSLELHVGSNSDPELLGRDVSVDLRPCFNDQMLEQGKGGGDSLENLWNDESMWFNLQQFSDGMESTYS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1258 250 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Lja5g1258 250 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 241 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja5g1258 250 SMART sant 79 127 IPR001005 -
Lja5g1258 250 SMART sant 26 76 IPR001005 -
Lja5g1258 250 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Lja5g1258 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Lja5g1258 250 MobiDBLite consensus disorder prediction 165 192 - -
Lja5g1258 250 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Lja5g1258 250 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Lja5g1258 250 Gene3D - 84 125 - -
Lja5g1258 250 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g1258 250 MobiDBLite consensus disorder prediction 165 190 - -
Lja5g1258 250 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Lja5g1258 250 MobiDBLite consensus disorder prediction 1 26 - -
Lja5g1258 250 CDD SANT 84 123 IPR001005 -
Lja5g1258 250 PANTHER MYB TRANSCRIPTION FACTOR 9 241 - -
Lja5g1258 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Lja5g1258 250 CDD SANT 29 74 IPR001005 -
Lja5g1258 250 Gene3D - 27 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1258 Lja-Chr5 12636885 12638357 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1258 25 162 MYB Transcription Factor Family AT1G48000 75.362 8.79e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g1258 Myb_DNA-binding 8.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1258 K09422 - gmx:778065 286.96