Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1196 ATGTGTGGCGGTGCTATCATCGCTGACTTCATCCCCCGCCGTGGAGGCCGCCGCCTCACCGCCTCCGAGCTCTGGCCAAACTCATTCGGCAAGCAAAATGACTCACAAATCGAAAAACCTCCCATTGCTCATCAACAACAACAACAACAACCATCCACCTTCAAAAGATCTCAACCTCACATAGCTGAGAAACCAATGAAAAGACAGAGGAAAAACCTCTACAGAGGAATCCGGCAACGTCCATGGGGAAAATGGGCTGCAGAAATTCGTGATCCGAGAAAAGGGGTTCGTGTTTGGCTCGGCACATTCAACACCGCTGAAGAAGCTGCTAGAGCCTACGATCGAGAAGCTCGGAAAATCCGTGGCAAGAAAGCTAAGGTGAATTTCCCCAACGAAGACGATGATGGCTACTCTGTTCAAACTCGTCGTTTCAACCCACCGGTTCCACTCCGACCCAATATCCCTCCCCTGTTTCAACAACAGTACCGTCACGATCAGAATCATAACCATAAGAATCTGAACTTTGAGTTTGGTTATGATCTGAACCAAACAGGGTCTTTTCCTCCCCACGTGGGTGGAATCAGCACTGACTCTGTTCTGGTATCTGTTGATGAAAATTCAGGGTCAGGGTCTGGATTAGGATCCGGAACAGGCTCAGAGGGTGATGGTTACTCACCAATGGAGTTCATGGGCTCTGAGCAGATCGGGAACGGTTACTTTGGCGGTGGTTTGAAGGAGAAGGAAAAGGAGAAAGAAACAGAGCAGAAAACAGAGGTGGTTGAAGAAGCTGAAGCGGCGGCGAAGAACGAAGTGCAGGAGCTGTCGGATGAGCTGATGGCGTACGAGAATTACATGAAATTCTACCAGATTCCGTACTATGATGGACAATCGGTGGCAGAGAATAATAGTGTTCAGGAAAGTGAGGTAGGGGATCTTTGGAGCTTCGATGAGTGA 954 0.4906 MCGGAIIADFIPRRGGRRLTASELWPNSFGKQNDSQIEKPPIAHQQQQQQPSTFKRSQPHIAEKPMKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDDGYSVQTRRFNPPVPLRPNIPPLFQQQYRHDQNHNHKNLNFEFGYDLNQTGSFPPHVGGISTDSVLVSVDENSGSGSGLGSGTGSEGDGYSPMEFMGSEQIGNGYFGGGLKEKEKEKETEQKTEVVEEAEAAAKNEVQELSDELMAYENYMKFYQIPYYDGQSVAENNSVQESEVGDLWSFDE* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1196 317 MobiDBLite consensus disorder prediction 25 59 - -
Lja5g1196 317 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Lja5g1196 317 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Lja5g1196 317 PANTHER EREBP TRANSCRIPTION FACTOR 44 295 - -
Lja5g1196 317 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Lja5g1196 317 MobiDBLite consensus disorder prediction 25 57 - -
Lja5g1196 317 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Lja5g1196 317 MobiDBLite consensus disorder prediction 243 264 - -
Lja5g1196 317 CDD AP2 74 131 IPR001471 GO:0003700|GO:0006355
Lja5g1196 317 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Lja5g1196 317 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Lja5g1196 317 Coils Coil 246 284 - -
Lja5g1196 317 MobiDBLite consensus disorder prediction 239 264 - -
Lja5g1196 317 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Lja5g1196 317 MobiDBLite consensus disorder prediction 205 224 - -
Lja5g1196 317 PANTHER DNA-BINDING DOMAIN 44 295 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1196 Lja-Chr5 11980325 11982148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1196 1 131 AP2-EREBP Transcription Factor Family AT3G16770 54.412 3.34e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g1196 AP2 9.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1196 K09286 - gmx:100819416 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1196 5 11980325 11982148 Lja5g1196 5 11980325 11982148 ECH