Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1080 ATGGACCCCGCGACGATGAGAAGACGACATGACGACGACGACGACGAAGAAGAAGAGTGCAACGCCGCGAGGAAACAGCCACGCAAAAGATTCCGGTTTCATCCTCGTTTCGATTTCTGCTTCCCCGACGCCGATTCTAGTTGGCGAGCCGGAACCTCCGCACACGGTGGTGGCGCCACTAATCTACGCCGCCGATTCCTGATTCGTCCAGAGAACGGATGGTACAGATTGTGGAAGTATTTCATTCTGTCTTGGGCAGTGTACTCTTCCTTCTTCACTCCTCTGGAGTTTGGATTCTTCAGAGGATTGCCTGAGGAAGTCTTCTTGCTCGACATCGCCGGCCAGTTTGCTTTCCTCGTTGATATCGTCATCCGATTCTTCGTCGCCTATCGTGACATCCATTCCTATTGCATGGTCTACGATCACAATCAAATTGCCACGAGGTACCTGAAGTCTCGGTTCACAGTTGATATTCTTAGCTGTCTTCCTTGGGATTATATTTACAAGGCTACTGGGAGGAAAGAAGTCATCAGGTATTTTTTATGGATTAGGCTGAGTCGAGCATGTAGAGTGACCGAGTTTTTTGAGAGGCTGGAGAAAGATATTAGGATCAATTACCTCTTTACAAGAATCGCAAAACTTCTTGCTGTAGAACTTTATTGCACCCACACAGCTGCCTGTATCTTCTACTATCTTGCTACCACTTTGCCTCCATCAAACGAAGGTTATACATGGATAGGCAGCTTAAAGATGGGAGATTATAGCTATTCAGACTTTAGACATATCAATCTTTGGAAGCGTTATGTGACATCACTCTACTTTGCAATTGTTACCATGGCAACTGTCGGCTATGGAGACATTCATGCAGTCAATGTCAGGGAAATGATATTTGTCATGGTTTATGTCTCCTTTGATATGATCCTCGGTGCTTACCTACTTGGTAATATGACAGCATTGATTGTGAGAGGATCAAAAACAGAGAGGTTTAGGGACAAAATGACTGATATTATTAAGTACATGAATAAAAACAATTTGGACAAGCAGATAACTAAAGCGATAAAAGGCCATTTACGCTTACAGTATGATCGCAGTTACACTGAGGATGCTGTGCTTCAGGATATTCCAGCCTCTATTCGTGCAAAGATTTCAGTGAATTTGTATGATCAATTTATACAAAAAGTTCCTCTTTTCAAGGGATGCTCTTTGGGATTCATTAAGCAAATTGCAATCAGAGTCCATGAAGAGTTTTTCCTTCCAGGAGAAGTGATTATGGAGCAAGGAAATGTAGCCAATCAACTTTACCTTGTATGCAATGGTGAGCTGGTTGAGATGAGGACAGAAGATGTTGATAAAGAAGTGTTCATAAAGCATTTGCAAAACTACTGTTTCTTTGGCGAGGTTTCTTTTCTTTGTGATATACCTCAACCTTCAACTATACGAGCGTGTGAATTTTGCAAGGTTTTGCGACTTGATAAGCACTCCTTTATAGAAACACTGAAGGTATATTTTGCAGATGGTCGAGTTATCTTGAACAATCTCCTTGAGGGAAAAGACTCCAGTCTTCAGCAGAAGCTCCTACAATCAAACTTCTCCTTGACTCTTGAAAACCATGAAACAGAGATGGTTATGAGAATGAATTGTGCTGCATATGAAGGAGATGTTCACTTTTTGAAACGTTTGATTGAATCCGGAGCAGATCCCAATAAGACTGATTATGATGGTAGATCACCCTTGCTTATTTCAGCATCGAACGGATATGTAGAAATTGTTCGTTTTCTTATTGAACATGGAGTGATGATCAATTTCTCTGATAAATTTGGGAATTCTCCCTTGTTTGAAGCCATCAAGAATGGGCATGAAGAAGTAGCTTCTTTACTTGTGGATGCGGGGGCTACCCTTACCGTAGATCATGCTGGGAATTTTCTCTGCATGACTGTTGCAAAGAAGGAGTTGAGCCTTCTAAGACGGGTCTTGGATTACGGTATTAATCCAAATGCCAGAAATTATGATCAGCGTACACCTCTTCACATAGCTGCCTCTGAAGGTTCGTGTAAAATGGCTGAGTTGCTTCTAGAAGTAGGAGCAAGTGTTTTGTCAAAGGACAGATGGGGGAATACAGCGATTGATGAAGCTCATATGGGAGGAAATAGGAACATGATCAAAATGCTCGAAGATGCAAAAATTTCTCAGTTGACTGAATTATCCCACAATATACTAGAACCTCGAGCAAAAGTGCTATTACCATCAACAGATAAAATTCCAAGAAAGAAATGCACTATATTTCCTTTCCATCCATGGGATCACAAAGCGGATAGAAGAGAGGGAGTTGTCTTGTGGGTTCCAAGAAGCATGCAAGAGCTTGTGCAGGTGGCAAGGAAGCATCTGAACTCAAGTGGTTCCTGTATTTTATCAGAACATGGCGGTAAAATTCTTGACGTAGACATGATTAGCAATGATGAGAAGCTATTTCTGGTTAGCGAACAAGAATCAGAGCGCTCATAA 2502 0.4193 MDPATMRRRHDDDDDEEEECNAARKQPRKRFRFHPRFDFCFPDADSSWRAGTSAHGGGATNLRRRFLIRPENGWYRLWKYFILSWAVYSSFFTPLEFGFFRGLPEEVFLLDIAGQFAFLVDIVIRFFVAYRDIHSYCMVYDHNQIATRYLKSRFTVDILSCLPWDYIYKATGRKEVIRYFLWIRLSRACRVTEFFERLEKDIRINYLFTRIAKLLAVELYCTHTAACIFYYLATTLPPSNEGYTWIGSLKMGDYSYSDFRHINLWKRYVTSLYFAIVTMATVGYGDIHAVNVREMIFVMVYVSFDMILGAYLLGNMTALIVRGSKTERFRDKMTDIIKYMNKNNLDKQITKAIKGHLRLQYDRSYTEDAVLQDIPASIRAKISVNLYDQFIQKVPLFKGCSLGFIKQIAIRVHEEFFLPGEVIMEQGNVANQLYLVCNGELVEMRTEDVDKEVFIKHLQNYCFFGEVSFLCDIPQPSTIRACEFCKVLRLDKHSFIETLKVYFADGRVILNNLLEGKDSSLQQKLLQSNFSLTLENHETEMVMRMNCAAYEGDVHFLKRLIESGADPNKTDYDGRSPLLISASNGYVEIVRFLIEHGVMINFSDKFGNSPLFEAIKNGHEEVASLLVDAGATLTVDHAGNFLCMTVAKKELSLLRRVLDYGINPNARNYDQRTPLHIAASEGSCKMAELLLEVGASVLSKDRWGNTAIDEAHMGGNRNMIKMLEDAKISQLTELSHNILEPRAKVLLPSTDKIPRKKCTIFPFHPWDHKADRREGVVLWVPRSMQELVQVARKHLNSSGSCILSEHGGKILDVDMISNDEKLFLVSEQESERS 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1080 833 ProSiteProfiles Ankyrin repeat profile. 670 702 IPR002110 GO:0005515
Lele48g1080 833 PANTHER POTASSIUM CHANNEL AKT1 57 828 IPR045319 GO:0005249|GO:0006813
Lele48g1080 833 ProSiteProfiles KHA domain profile. 757 833 IPR021789 -
Lele48g1080 833 SUPERFAMILY cAMP-binding domain-like 324 513 IPR018490 -
Lele48g1080 833 CDD CAP_ED 396 510 IPR000595 -
Lele48g1080 833 Gene3D Jelly Rolls 386 505 IPR014710 -
Lele48g1080 833 PRINTS EAG/ELK/ERG potassium channel family signature 220 230 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele48g1080 833 PRINTS EAG/ELK/ERG potassium channel family signature 111 121 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele48g1080 833 PRINTS EAG/ELK/ERG potassium channel family signature 479 487 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele48g1080 833 PRINTS EAG/ELK/ERG potassium channel family signature 312 321 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele48g1080 833 PRINTS EAG/ELK/ERG potassium channel family signature 268 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele48g1080 833 ProSiteProfiles Ankyrin repeat profile. 606 638 IPR002110 GO:0005515
Lele48g1080 833 Pfam KHA, dimerisation domain of potassium ion channel 756 824 IPR021789 -
Lele48g1080 833 ProSiteProfiles Ankyrin repeat region circular profile. 573 605 - -
Lele48g1080 833 Pfam Ankyrin repeats (3 copies) 547 634 IPR002110 GO:0005515
Lele48g1080 833 FunFam Potassium channel SKOR 76 321 - -
Lele48g1080 833 SMART ANK_2a 573 602 IPR002110 GO:0005515
Lele48g1080 833 SMART ANK_2a 703 733 IPR002110 GO:0005515
Lele48g1080 833 SMART ANK_2a 637 666 IPR002110 GO:0005515
Lele48g1080 833 SMART ANK_2a 540 569 IPR002110 GO:0005515
Lele48g1080 833 SMART ANK_2a 670 699 IPR002110 GO:0005515
Lele48g1080 833 SMART ANK_2a 606 635 IPR002110 GO:0005515
Lele48g1080 833 Gene3D Helix hairpin bin 324 385 - -
Lele48g1080 833 ProSiteProfiles Ankyrin repeat region circular profile. 670 702 - -
Lele48g1080 833 ProSiteProfiles Ankyrin repeat profile. 573 605 IPR002110 GO:0005515
Lele48g1080 833 SMART cnmp_10 396 514 IPR000595 -
Lele48g1080 833 MobiDBLite consensus disorder prediction 1 23 - -
Lele48g1080 833 Gene3D - 509 732 IPR036770 -
Lele48g1080 833 Pfam Ankyrin repeats (many copies) 658 711 IPR002110 GO:0005515
Lele48g1080 833 FunFam Potassium channel KAT2 384 520 - -
Lele48g1080 833 ProSiteProfiles Ankyrin repeat region circular profile. 606 635 - -
Lele48g1080 833 SUPERFAMILY Ankyrin repeat 544 726 IPR036770 -
Lele48g1080 833 Gene3D - 76 321 - -
Lele48g1080 833 ProSiteProfiles cAMP/cGMP binding motif profile. 396 499 IPR000595 -
Lele48g1080 833 SUPERFAMILY Voltage-gated potassium channels 72 321 - -
Lele48g1080 833 Pfam Ion transport protein 76 321 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele48g1080 833 Pfam Cyclic nucleotide-binding domain 416 500 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1080 Lele-ChrLele48 15588151 15596365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1080 6 702 Ion Channels AT5G37500 57.441 0.0 852