Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1188 ATGGGGTTCTCTCTCACTCCACACTTGAAGATTGATGAAGTATATGGGAATGGTAGAGAAAACCAAGAAGAACACCGTGGAGGCTATCCTCCTTCTCATCCTCGCTTGTCGATTATGCCTTTAAGATCAGATGGCTCTCTATGTGTTGCTGACCCTTTTAGGCACTCTTGTGCCGCTGAAGAATGGAGGTATGATAATGGAGTTGCAGGAAGAAGCTCCAATGAAGAAGGTCCAAAGCTTGAAGATTTCTTGGGTTGTTACTCAAACTCCTCTGATATTGCTGAAACCAAAGTGTATTGCCAAGGCAGTGCACAACAAGAAGACCAAGACCAGAACCAGAGCCAGAACCAGGACAGCATTTCCAGCAGAATCAATGTGAATGTGGCCCCAAGGTTCAGCACCAACACTGACATAGAAGCTAATAATGGGGAAGATTTCACAAACCCTCCTTCCTTAATCCAATCTTTTCATGCATACAACGATGGTAACTCGCGAGCTGTAATCACAAATAGTGGCATGTACAAGTCCTGGTTGGCTCAATCTCAAACTTCTGCGGAAGTAAATGGCTATAACTACCAATCTCTAGCTCTAACTATGAGTCCTAGTGTACAAAACGCTCTTTGTGGTGCAATTTCCCCGGTTCAAGTTGAAGATGATGCTCGCAAAAGGTCAATGTCAAAATCTCTTGCTACTAGAGAACCTGTGCCTCGCAAATCTATTGATACCTTTGGTCAAAGAACATCTCAATATAGAGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGTAGGAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGAAAAAGCAGCAAGGGCGTATGACTTGGCTGCGCTCAAGTATTGGGGTCCAACTACTCACATAAATTTCCCTTTAAGTACATACGAGAAGGAACTTGAAGAGATGAAGCACATGACTAGGCAAGAATTCGTGGCCAATTTGAGAAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGGGGCGTGACAAGTGGCAAAACGTTCATCTGTTTCCCTTGCCCATCTTCAGACACCATCAACATGGAAGGTGGCAAGCTAGGATTGGTAGAGTTGCAGGAAACAAAGACTTGCACACAAGAGGAAGCTGCAGAAGCATATGATATTGCAGCGATAAAGTTCAGGGGAACTAGTGCTGTGACCAACTTTGATATAAGCCGGTATGACGTGAAGAGAATATGCTCGAGCTCGACTCTCATTGCTGGAGATCTAGCGAAGAAGTCCCCGAAAGACTTAACCCCAGGTCCCGGCGTCGCCGCCACCACCTCAACCGACGACTTAAATTCTAATGCATCCAAGACGTTGGCGGCGACGACGGCTCATCAGCAACAGCCACAGCCTTTTTTGGCTGTAACAAATGGGGAGCATTCTTCTGATGAGTTAGCCGACATGGTTTGGAATGATGATGGGAACCACACCGAGAAACAGGTGAATGATCAGAGTTCTTCAGAGAACAGCAAGAATAATAACGATGGTAAGAATGCGACAAACTCAGAAGAGAGTCACAAGTGTTCAGTGGGAATGGGGAATGAGTTCGGGGTGAATAATGGTTCAGGGTTTGGAGCTGGGTTCTTCTCGTTGCAGGCAACAAAGTATAATAATGACGAGGATGGGAACAACGAGGACAACGGTAATGATAACTTGAATAATGACAATCGCATTGGGAACATGGGACTGGTTCATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1785 0.4521 MGFSLTPHLKIDEVYGNGRENQEEHRGGYPPSHPRLSIMPLRSDGSLCVADPFRHSCAAEEWRYDNGVAGRSSNEEGPKLEDFLGCYSNSSDIAETKVYCQGSAQQEDQDQNQSQNQDSISSRINVNVAPRFSTNTDIEANNGEDFTNPPSLIQSFHAYNDGNSRAVITNSGMYKSWLAQSQTSAEVNGYNYQSLALTMSPSVQNALCGAISPVQVEDDARKRSMSKSLATREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTSGKTFICFPCPSSDTINMEGGKLGLVELQETKTCTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKKSPKDLTPGPGVAATTSTDDLNSNASKTLAATTAHQQQPQPFLAVTNGEHSSDELADMVWNDDGNHTEKQVNDQSSSENSKNNNDGKNATNSEESHKCSVGMGNEFGVNNGSGFGAGFFSLQATKYNNDEDGNNEDNGNDNLNNDNRIGNMGLVHQVPMFALWNE 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1188 594 MobiDBLite consensus disorder prediction 101 125 - -
Lele39g1188 594 Gene3D AP2/ERF domain 248 308 IPR036955 GO:0003700|GO:0006355
Lele39g1188 594 Gene3D AP2/ERF domain 380 409 IPR036955 GO:0003700|GO:0006355
Lele39g1188 594 MobiDBLite consensus disorder prediction 555 574 - -
Lele39g1188 594 PRINTS Ethylene responsive element binding protein signature 389 409 IPR001471 GO:0003700|GO:0006355
Lele39g1188 594 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Lele39g1188 594 MobiDBLite consensus disorder prediction 499 525 - -
Lele39g1188 594 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 73 503 - -
Lele39g1188 594 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Lele39g1188 594 MobiDBLite consensus disorder prediction 488 525 - -
Lele39g1188 594 SUPERFAMILY DNA-binding domain 248 308 IPR016177 GO:0003677
Lele39g1188 594 Pfam AP2 domain 249 298 IPR001471 GO:0003700|GO:0006355
Lele39g1188 594 MobiDBLite consensus disorder prediction 429 451 - -
Lele39g1188 594 ProSiteProfiles AP2/ERF domain profile. 342 407 IPR001471 GO:0003700|GO:0006355
Lele39g1188 594 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Lele39g1188 594 SMART rav1_2 369 413 IPR001471 GO:0003700|GO:0006355
Lele39g1188 594 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1188 Lele-ChrLele39 20600292 20603491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1188 1 432 AP2-EREBP Transcription Factor Family AT1G72570 43.432 4.22e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele39g1188 AP2 4.6e-07 CL0081