Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0084 ATGGTTTCTGGTTCTTTCAGTACGCTGTCCTGTAAATTTGGTTCTTTGAATGTTACTGCAGCATGTGTAACGAAGGTGAAAATGTCCTCCTCAAGACCTAGCCAGTCATCCAGTAATTCGGGAAGATCAAGACATACTGCTCGAATTATTGCTCAGACCACTGTAGATGCAAAACTACATGCAAATTTTGAGGAGTCTGGTACCTCTTTTGACTACTCAAACTCGGTGCGTATCTCAGGTACAGTAAATGGAGAGCAGCAACCAAGATCTGACCGAGTGACTACAGCTTACCTCCATCACATACAGAAAGGCAAGCTGATCCAGCCTTTTGGGTGCTTGCTAGCCTTAGATGAGAAAACATGCAAAGTGATTGCATACAGTGAGAATGCTCCTGAAATGTTGACCATGGTTAGTCATGCTGTACCTAGTGTAGGTGACAACCCTGCCCTTGGCATTGGCACCGACATAAGAACCATATTCACTGCCCCAAGTGCTTCTGCGTTGCAGAAAGCATTAGGATTTGGGGAAGTTTCACTTCTCAACCCCATTCTAGTCCATTGCAAGACCTCTGGAAAGCCCTTTTATGCAATTATTCATCGTGTGACCGGAAGCTTGATAATTGATTTTGAGCCAGTCAAGCCTTTTGAAGTTCCCATGACTGCAGCTGGTGCCCTTCAATCTTACAAGCTTGCTGCCAAAGCAATCACTAGATTGCAATCTTTGTCAAGTGGGAGTATGGAAAGGCTATGTGATACGATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGATGATCATGGGGAAGTAATTGCTGAGATCACAAAGCCAGGTTTAGAGCCATATCTGGGTTTGCATTACCCAGCCACTGATATTCCACAGGCTGCACGGTTTTTATTTATGAAGAACAAGGTGCGTATGATAGTAGATTGTCGTGCGAGGCATGTGAAGGTGCTTCAAGATGGAAAGCTTCCATTTGAGTTAACCTTGTGTGGTTCAACCTTGAGGGCCCCTCATAGTTGCCATTTGCAATATATGGAGAACATGAATTCCATTGCTTCCCTGGTTATGGCAGTGGTGGTCAATGACAGTGATGAAGATGTGGACAGCTCTGATTCTATACAGCCGCAGAAGAGAAAGAGACTTTGGGGTTTAGTAGTTTGCCATAACACTACACCAAGGTTTGTTCCTTTTCCTCTTCGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTCAATAAAGAATTAGAGTTAGAATACCAGATTGTTGAGAAAAACATCCTGCGCACCCAGACACTTCTATGTGATATGCTGATGCGAGATGCTCCCCTAGGTATTATATCACAGAGCCCAAATATAATGGATCTTGTGAAATGTGATGGGGCTGCCCTCTTGTATAAAAACAAGGTATGGAGACTAGGAGTAACACCAAGCGAATCCCAGATCCGAGATATATCTATATGGCTCTCTGAGAACCATATGGATTCCACAGGTTTAAGTACAGATAGCCTGGCTGAAGCAGGGTTACCAGGTGCTCTTGCTCTTGATGATATAGTATGTGGGATGGCAGCTGTGAGAATATCTTCAAAAGATATGGTTTTCTGGTTTCGATCGCATACTGCTGCAGAGATTCGATGGGGTGGTGCGAAGCATGAGCCTGGTGAACAGGATGACAATAGGAGGATGCATCCAAGATCATCATTTAAAGCTTTCCTTGAAGTTGTGAAGTCAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATCCATTCCTTGCAGTTAATCCTGAGGAACGCGTTTAAAGATACAGAGAGTATGGATGTAACCACCCATGTAATTAACACAAGATTGAGCGATTTGAAGGTTGAAGGGATGCAGGAACTGGAGGCAGTGACAAGTGAGATGGTTCGGTTAATTGAAACAGCAACAGTGCCAATATTGGCAGTTGATGTTGATGGGCTGGTCAATGGGTGGAATACAAAAGTTGCTGTGTTGACGGGTCTTCCAGCTGATGAAGCAATCGGGAAGCATCTGCTCACACTAGTTGAGGATTCTTCAACTGATAGGGTCAAGAAGATGCTGGACATGGCAATGCAAGGTGAAGAAGAGCAGAATGTCCAATTTGAGATCAAAACACATGCTTCTAAGATTGATTCTGGTCCCATCAGGTTGGTTGTTAATGCTTGTGCAAGTAGAGACCTTCGAGACAACGTAGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACGGTCATGGACAAATTCACTCGAATTGAAGGTGATTACAAGGCTATTGTCCAGAATCCAAACCCATTGATACCCCCAATATTTGGTACAGATGAATTTGGCTGGTGTTGTGAGTGGAATGCCGCAATGATCAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGACAAAATGCTCTTAGGGGAGGTCTTTGGAACTCATGCAGCTTGTTGCCGTTTAAAGAATCAAGAAGCTTTTGTTAATTTTGGAATTGCACTTAATAAAGCTATGACCGGTTTGGAAACTGAGAAGGTTGCTTTTGGATTTTTTTCTCAGAATGGGAAGTATGTAGAGTGCCTGCTTTCTGTGAGTAAGAAGTTGGACATAGAGGGGACAGTTACAGGGGTTTTCTGCTTCTTGCAGCTAGCTAGCCCAGAGTTGCAACAAGCATTACATATTCAGCGGCTATCTGAACAAACTGCCTTGAAGAGACTGAAAGCTTTAACTTACATGAAAAGGCAGATACGGAATCCTTTATGTGGGATTGTGTTCTCCCGTAAAATGTTGGAGGGTACTGAGTTGGGAACTGAACAGAAACAACTTCTGCACACTAGTTCCCTGTGCCAGCGCCAGATCAGCAAAGTTCTTGATGATTCTGATCTTGACAGCATCATTGATGGGTACTTGGATCTGGAGATGGTGGAATTTACTCTGCATGAAGTATTGGTTGCCTCTCTCAGTCAAGTAATGACAAAGAGCAATGCAAACGGCATCAGAATAGTGAACGAGGTGGAAGAGCAGATCATGACAGAGACCTTGTATGGTGACAGTCTCAGGCTTCAACAGGTCTTAGCTGACTTCTTATTGATGTCCGTCACTTTTACACCCTCTGGAGGTAAGGTGGTTGTTGCAGCCTCTTTAACCAAAGATCAGTTGGGACAATCCGTTCATCTTGCCAATTTGGAGCTCAGCATAACACATGCTGGAAGTGGGATTCCGGAAGCATTGCTAAACGAGATGTTTGGAAGTGATGCACAAGAATCTGAAGAGGGTATTAGCCTGCTTATTAGTAGAAAACTGGTGAAGCTCATGAACGGAGATGTCCGTTATCTGAGGGAAGCAGGCAAATCATCCTTCATTTTAACTGCTGAACTCGCTGCAGCCCACAAATCAAGGGCTTAA 3456 0.4389 MVSGSFSTLSCKFGSLNVTAACVTKVKMSSSRPSQSSSNSGRSRHTARIIAQTTVDAKLHANFEESGTSFDYSNSVRISGTVNGEQQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDNPALGIGTDIRTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPFEVPMTAAGALQSYKLAAKAITRLQSLSSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDGKLPFELTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDSDEDVDSSDSIQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIVEKNILRTQTLLCDMLMRDAPLGIISQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIRDISIWLSENHMDSTGLSTDSLAEAGLPGALALDDIVCGMAAVRISSKDMVFWFRSHTAAEIRWGGAKHEPGEQDDNRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKDTESMDVTTHVINTRLSDLKVEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKVAVLTGLPADEAIGKHLLTLVEDSSTDRVKKMLDMAMQGEEEQNVQFEIKTHASKIDSGPIRLVVNACASRDLRDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNAAMIKLTGWKREEVMDKMLLGEVFGTHAACCRLKNQEAFVNFGIALNKAMTGLETEKVAFGFFSQNGKYVECLLSVSKKLDIEGTVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKALTYMKRQIRNPLCGIVFSRKMLEGTELGTEQKQLLHTSSLCQRQISKVLDDSDLDSIIDGYLDLEMVEFTLHEVLVASLSQVMTKSNANGIRIVNEVEEQIMTETLYGDSLRLQQVLADFLLMSVTFTPSGGKVVVAASLTKDQLGQSVHLANLELSITHAGSGIPEALLNEMFGSDAQESEEGISLLISRKLVKLMNGDVRYLREAGKSSFILTAELAAAHKSRA 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0084 1151 FunFam Phytochrome 433 564 - -
Lele08g0084 1151 Gene3D - 433 606 IPR043150 -
Lele08g0084 1151 ProSitePatterns Phytochrome chromophore attachment site signature. 345 354 IPR013516 -
Lele08g0084 1151 SUPERFAMILY PYP-like sensor domain (PAS domain) 650 757 IPR035965 -
Lele08g0084 1151 CDD PAS 788 899 IPR000014 -
Lele08g0084 1151 ProSiteProfiles PAS repeat profile. 777 829 IPR000014 -
Lele08g0084 1151 SMART pas_2 646 712 IPR000014 -
Lele08g0084 1151 SMART pas_2 776 845 IPR000014 -
Lele08g0084 1151 Coils Coil 425 445 - -
Lele08g0084 1151 Pfam GAF domain 245 428 IPR003018 GO:0005515
Lele08g0084 1151 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 983 1136 IPR036890 -
Lele08g0084 1151 SUPERFAMILY PYP-like sensor domain (PAS domain) 791 897 IPR035965 -
Lele08g0084 1151 TIGRFAM sensory_box: PAS domain S-box protein 651 767 IPR000014 -
Lele08g0084 1151 ProSiteProfiles Histidine kinase domain profile. 928 1145 IPR005467 -
Lele08g0084 1151 Gene3D PAS domain 790 902 - -
Lele08g0084 1151 CDD PAS 655 761 IPR000014 -
Lele08g0084 1151 SMART HKATPase_4 1033 1145 IPR003594 -
Lele08g0084 1151 SMART gaf_1 245 438 IPR003018 GO:0005515
Lele08g0084 1151 FunFam Phytochrome 640 771 - -
Lele08g0084 1151 PIRSF Phytochrome_conventional 26 1151 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lele08g0084 1151 ProSiteProfiles PAS repeat profile. 644 714 IPR000014 -
Lele08g0084 1151 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1033 1143 IPR003594 -
Lele08g0084 1151 Pfam Phytochrome region 441 616 IPR013515 GO:0006355|GO:0009584
Lele08g0084 1151 Gene3D PAS domain 101 348 - -
Lele08g0084 1151 Pfam PAS fold 96 212 IPR013654 GO:0006355
Lele08g0084 1151 Gene3D - 984 1149 IPR036890 -
Lele08g0084 1151 SUPERFAMILY GAF domain-like 225 425 - -
Lele08g0084 1151 CDD HATPase_Phy-like 1032 1143 IPR044767 -
Lele08g0084 1151 Pfam PAS fold 647 761 IPR013767 GO:0006355
Lele08g0084 1151 Pfam PAS fold 777 899 IPR013767 GO:0006355
Lele08g0084 1151 PANTHER TWO-COMPONENT HISTIDINE KINASE 875 1128 - -
Lele08g0084 1151 SMART HisKA_10 921 982 IPR003661 GO:0000155|GO:0007165
Lele08g0084 1151 SUPERFAMILY GAF domain-like 436 614 - -
Lele08g0084 1151 SUPERFAMILY PYP-like sensor domain (PAS domain) 101 213 IPR035965 -
Lele08g0084 1151 PRINTS Phytochrome signature 576 594 IPR001294 GO:0006355|GO:0009584
Lele08g0084 1151 PRINTS Phytochrome signature 759 779 IPR001294 GO:0006355|GO:0009584
Lele08g0084 1151 PRINTS Phytochrome signature 543 562 IPR001294 GO:0006355|GO:0009584
Lele08g0084 1151 PRINTS Phytochrome signature 345 366 IPR001294 GO:0006355|GO:0009584
Lele08g0084 1151 PRINTS Phytochrome signature 160 182 IPR001294 GO:0006355|GO:0009584
Lele08g0084 1151 PRINTS Phytochrome signature 458 478 IPR001294 GO:0006355|GO:0009584
Lele08g0084 1151 PRINTS Phytochrome signature 647 663 IPR001294 GO:0006355|GO:0009584
Lele08g0084 1151 PRINTS Phytochrome signature 739 756 IPR001294 GO:0006355|GO:0009584
Lele08g0084 1151 PRINTS Phytochrome signature 666 681 IPR001294 GO:0006355|GO:0009584
Lele08g0084 1151 PRINTS Phytochrome signature 260 279 IPR001294 GO:0006355|GO:0009584
Lele08g0084 1151 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 245 418 IPR016132 -
Lele08g0084 1151 ProSiteProfiles PAC domain profile. 717 773 IPR000700 -
Lele08g0084 1151 Gene3D PAS domain 638 775 - -
Lele08g0084 1151 Gene3D - 226 589 IPR029016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0084 Lele-ChrLele08 495647 500568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0084 28 1148 Histidine Kinase Gene Family AT1G09570 80.481 0.0 1905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0084 08 495647 500568 Lele08g0084 08 495647 500568 ECH
Lele05g0263 05 1481123 1485659 Lele08g0084 08 495647 500568 hybridization
Lele06g0081 06 519832 524190 Lele08g0084 08 495647 500568 hybridization