Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00772 ATGGAGAACTTTTACTATTCAACAACTTATTCAGACCAGTCAACAACAATGGCTCCACCTCCGCCGACTAAGGCTGTCTTTGGGAAGGAAGAGGATGTTTCAAAAGCACTTCGTGATAAAGTTGCTTCTCACCCTCTATTTCCTCACCTCCTCCATGCCTACATCGATTGCCACAAGGTGGGAGCTCCACAAGATATGGCAGACCTATTTGAAGAAATCAAAGTAGAGCATAGTGGGTTGTGTCAGATATCTGAATCTAAATCTTATCATGGCTTCTTGGGTGCTGATCCCGAGCTTGACGATTTCATGGGAACCTTTTGCGATTTGTTGGTGAAGTACAAATCGGATCTTTCAAGACCTTTTAACGATGCAACCATGTTCCTTAGCCACATGGAAACTCAGCTTCACTCCATCGGCAGCGATCTTGCTACCACAGACAACACTCCTTCTCAACCTGCAGGTGACGTTGGTGGATCATCAGGGAAAGATAATAGGGAGGAGATTAAGAGAATTGAAAGCAAGAAGAACAATGAAGTTCAAGAGCTGAAGGATAATCTTCTAAGTCGATATAGCGGTTACATTACTAATCTGAAACATGAATTTTCCAGAAAGAAAAAGAAAGAAAAACTACCAAAAGAAGCAAAGAAAATCTTACTTGCATGGTGGCACATTCACTATAAATGGCCATACCCAACGGATGCTGATAAGGTTGCCTTAGCTGAATGGACTGGTTTGGAGCAGAAGCAGGTAAATAACTGGTTTATAAACCAAAGAAAACGCCATTGGAAACCATCAGAGGAAATGCAGGTTGCGATTTTGGATGGACTCTATGGACCCCTGCACGAGTGA 849 0.4264 MENFYYSTTYSDQSTTMAPPPPTKAVFGKEEDVSKALRDKVASHPLFPHLLHAYIDCHKVGAPQDMADLFEEIKVEHSGLCQISESKSYHGFLGADPELDDFMGTFCDLLVKYKSDLSRPFNDATMFLSHMETQLHSIGSDLATTDNTPSQPAGDVGGSSGKDNREEIKRIESKKNNEVQELKDNLLSRYSGYITNLKHEFSRKKKKEKLPKEAKKILLAWWHIHYKWPYPTDADKVALAEWTGLEQKQVNNWFINQRKRHWKPSEEMQVAILDGLYGPLHE* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00772 282 SMART KNOX2_2 89 140 IPR005541 GO:0003677|GO:0005634
Lapu9g00772 282 Pfam ELK domain 181 202 IPR005539 GO:0003677
Lapu9g00772 282 SMART KNOX1_2 35 79 IPR005540 GO:0003677|GO:0005634
Lapu9g00772 282 ProSiteProfiles 'Homeobox' domain profile. 201 264 IPR001356 GO:0003677
Lapu9g00772 282 CDD homeodomain 217 265 IPR001356 GO:0003677
Lapu9g00772 282 Pfam KNOX2 domain 94 138 IPR005541 GO:0003677|GO:0005634
Lapu9g00772 282 ProSiteProfiles ELK domain profile. 181 201 IPR005539 GO:0003677
Lapu9g00772 282 SUPERFAMILY Homeodomain-like 203 274 IPR009057 -
Lapu9g00772 282 ProSitePatterns 'Homeobox' domain signature. 239 262 IPR017970 GO:0000981|GO:0006355
Lapu9g00772 282 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 269 - -
Lapu9g00772 282 SMART ELK_2 181 202 IPR005539 GO:0003677
Lapu9g00772 282 MobiDBLite consensus disorder prediction 140 157 - -
Lapu9g00772 282 Pfam KNOX1 domain 37 75 IPR005540 GO:0003677|GO:0005634
Lapu9g00772 282 Coils Coil 165 185 - -
Lapu9g00772 282 Gene3D - 199 271 - -
Lapu9g00772 282 SMART HOX_1 203 268 IPR001356 GO:0003677
Lapu9g00772 282 MobiDBLite consensus disorder prediction 140 164 - -
Lapu9g00772 282 Pfam Homeobox KN domain 221 260 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00772 Lapu-Chr9 10629805 10651309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00772 36 274 Homeobox Transcription Factor Family AT1G70510 48.980 2.27e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lapu9g00772 KNOX2 8.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00772 - - gmx:102662019 396.356