Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00055 ATGAGTGTGAAGGAAGCAAAAGGTGGTATCGTGGTTGGGAAATACCAGTTGGGAAAAACCATTGGAGAGGGAAGCTTTGCGAAGGTCAAGCTCGCCAGAGATGTCCACAACGGCAACAAATTTGCCATCAAAATCCTCAACCGTAAACATGTCCTCCGCCACAACATGATGGAACAGCTCATGCGGGAAATATCAACCATGAAACTCATCAATCACCCCAACGTTACTAAAATATTTGAGGTGATGGCAAGCAAAACAAAGATTTACATTGTTCTGGAGTTAGTTGATGGGGGAGAGCTATTTGACAAAATAGCTGCAAAGGGGAGACTTAAAGAGAATGAAGCTAGAAATTACTTCCAACAACTTATTAATGCTGTTGACTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCGAATAGTGTTCTTAAAGTTTCAGATTTTGGATTGAGTACGTACTCGCAGAAAGAAGATGAACTGCTCCGCACTGCATGTGGAACCCCAAACTATGTTGCCCCTGAGGTGATTCATAATAGAGGCTACGTTGGTTCTACATCTGACATCTGGTCTTGCGGAGTCATTCTCTTTGTACTTATGGCTGGGTTCTTGCCTTTTGATGCGCCGACTCATATGGCTCTGTTCAGGAAAATTGTGAAGGCAGAATTTTCTTGTCCATCGTGGTTTCCGCCACAGGCAAAGACACTGCTGAAACGCATTCTGGACCCAAACCCTCTAACGAGGATAAAAATTCCTGAGCTCTTAAAAGACGAGTGGTTCAAGAAAGGATACAAACCAACATCTTTTACTGAGGAAGAGGACCTAAGTGTAGATGATGTAACTGTTGCTTTCAATGAGCCCAATAAAAATCTAGTCACAGAGAGAAAAGGGAAACCCGTCTACATTAATGCTTTTGAGCTCATTTCTAGGTCACAAAGTTTCAATCTTGACAGTTTGTTCGAGAAGCAAACGGATGAAGTAAAGCAAGAAACCTGTTTTACTTCACAGTGCCCTGCAAATGAAATTATGTACAAAATCGAGGAAGCAGCCAAACCACTGGGATTTAATGTGCAAAAGCAAAATTATTATAAGATGAAGCTGCAAGGTGACCACAACGGGAGGAGGGGTCACCTTTCAGTGGCTACCGAGGTTTTCGAAGTGGCTCCCTCAGTGCACATGGTGGAGCTTCGAAAGACAGGGGGTGATACACTTGAGTTTCATAAGGCATGTGAAAGTTCCTATTCTTTGCTTCTGATCCAGAATACAAGAGCCAATTTTTGA 1305 0.4284 MSVKEAKGGIVVGKYQLGKTIGEGSFAKVKLARDVHNGNKFAIKILNRKHVLRHNMMEQLMREISTMKLINHPNVTKIFEVMASKTKIYIVLELVDGGELFDKIAAKGRLKENEARNYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNSVLKVSDFGLSTYSQKEDELLRTACGTPNYVAPEVIHNRGYVGSTSDIWSCGVILFVLMAGFLPFDAPTHMALFRKIVKAEFSCPSWFPPQAKTLLKRILDPNPLTRIKIPELLKDEWFKKGYKPTSFTEEEDLSVDDVTVAFNEPNKNLVTERKGKPVYINAFELISRSQSFNLDSLFEKQTDEVKQETCFTSQCPANEIMYKIEEAAKPLGFNVQKQNYYKMKLQGDHNGRRGHLSVATEVFEVAPSVHMVELRKTGGDTLEFHKACESSYSLLLIQNTRANF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00055 434 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Lapu9g00055 434 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 416 - -
Lapu9g00055 434 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Lapu9g00055 434 SUPERFAMILY Protein kinase-like (PK-like) 11 282 IPR011009 -
Lapu9g00055 434 FunFam Non-specific serine/threonine protein kinase 9 307 - -
Lapu9g00055 434 ProSiteProfiles Protein kinase domain profile. 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00055 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Lapu9g00055 434 Pfam NAF domain 307 367 IPR004041 GO:0007165
Lapu9g00055 434 CDD CIPK_C 311 426 - -
Lapu9g00055 434 Gene3D Kinase associated domain 1, KA1 305 427 - -
Lapu9g00055 434 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00055 434 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Lapu9g00055 434 Gene3D Transferase(Phosphotransferase) domain 1 95 293 - -
Lapu9g00055 434 SMART serkin_6 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00055 434 FunFam Non-specific serine/threonine protein kinase 304 426 - -
Lapu9g00055 434 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00055 Lapu-Chr9 438682 443834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00055 12 422 CBL-interacting serine-threonine protein kinases AT1G01140 70.290 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu9g00055 Pkinase 6.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00055 - - gmx:100777218 720.309