Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00397 ATGCGACTTGGGAAATACGAGTTGGGTAGGACCCTTGGTGAAGGCAATTTTGGTAAAGTCAAGTTCGCTAAGAACACTGATTCTGGTCAACCTTTTGCTGTTAAGATCATTGAGAAGAACAACATCATCCATCTCAACATAACCAATCAGATAAAGAGAGAAATAGCCACATTAAAGCTCCTCAGACATCCCAACGTTGTCAGATTATACGAGGTCTTGGCTAGTAAAACAAAAATTTATATGGTACTTGAGTTTGTGAATGGAGGGGAGTTATTTGACATAATTGCATCCAAAGGTAAACGCTCGGAAGGTGAAGGTAGAAAGCTGTTCCAACAGTTGATTGATGGGGTGAGCTACTGCCACACTAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTGGTGGATGACAAAGGGAACTTAAAAATAACAGATTTTGGTCTAAGTGCTTTACCCCAGCATCTTAGGGCAGATGGATTGCTGCATACAACCTGTGGAAGTCCCAATTATGTTGCACCTGAGGTTCTTGCTAATAAGGGTTATGATGGTGCAACATCAGATGCATGGTCATGTGGTGTTTTATTATATGTAATCCTAACAGGAAGCCTACCTTTTGATGATAGAAATATTGTAGTTCTCTATCAGAAGATTTTTAAAGGAGATGTTCAAATACCAAAATGGCTGTCACCAGGTGCACAAACCTTGATAAAGAGGATTCTTGATCCCAACCCTGAAACAAGGATAACAATGGCTGGGATCAAAGAAGATCCCTGGTTTAAGAAGGCTTATGTTCCAGCAAATCCTGAGGATGAGGATGAGGGTGTATATGTTGACAATGAAGCCTTTTCCATCCATGAAGAGCCAAATGAAGTAGAACAGAGGAATTCAGGATCACCAACCCTTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTCTTTGAGAAAGAGGATGTCTCAGAGAGAAAGATAAGATTTACATCAAATCTTTCAGTTAAAGATCTGATTGAGAGGATTGAGGACACTGTGACAGAAATGGAATTTCTAGTCCAGAGGAAAAATGGCAAATTGAAAGTGATCCGGGCGAACAAGGTGCACAAAACTATAGGATGTCTTTCAGTGGCAGTAGAGGTGTTTGAAATAAGTCCATCACTGTACGTGGTAGAATTAAGGAAGTCTTGTGGGGAGACTTCTGTGTATAAACAGTTATGCAATAAACTGTTGAATGATTTGAGTGTTCATTCCAAGCAAGGGCTGGTGAACTCAGCAGCCAGATAA 1302 0.4071 MRLGKYELGRTLGEGNFGKVKFAKNTDSGQPFAVKIIEKNNIIHLNITNQIKREIATLKLLRHPNVVRLYEVLASKTKIYMVLEFVNGGELFDIIASKGKRSEGEGRKLFQQLIDGVSYCHTKGVFHRDLKLENVLVDDKGNLKITDFGLSALPQHLRADGLLHTTCGSPNYVAPEVLANKGYDGATSDAWSCGVLLYVILTGSLPFDDRNIVVLYQKIFKGDVQIPKWLSPGAQTLIKRILDPNPETRITMAGIKEDPWFKKAYVPANPEDEDEGVYVDNEAFSIHEEPNEVEQRNSGSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNLSVKDLIERIEDTVTEMEFLVQRKNGKLKVIRANKVHKTIGCLSVAVEVFEISPSLYVVELRKSCGETSVYKQLCNKLLNDLSVHSKQGLVNSAAR* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00397 433 SMART serkin_6 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00397 433 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Lapu3g00397 433 FunFam Non-specific serine/threonine protein kinase 1 301 - -
Lapu3g00397 433 CDD CIPK_C 305 416 - -
Lapu3g00397 433 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Lapu3g00397 433 ProSiteProfiles NAF domain profile. 299 323 IPR018451 GO:0007165
Lapu3g00397 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 404 - -
Lapu3g00397 433 SUPERFAMILY Protein kinase-like (PK-like) 3 282 IPR011009 -
Lapu3g00397 433 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00397 433 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00397 433 FunFam Non-specific serine/threonine protein kinase 301 423 - -
Lapu3g00397 433 Pfam NAF domain 301 359 IPR004041 GO:0007165
Lapu3g00397 433 Gene3D Kinase associated domain 1, KA1 306 421 - -
Lapu3g00397 433 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
Lapu3g00397 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lapu3g00397 433 Coils Coil 340 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00397 Lapu-Chr3 4029392 4034762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00397 69 425 CBL-interacting serine-threonine protein kinases AT3G17510 68.156 3.87e-171 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu3g00397 Pkinase 5.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00397 K07198 - gmx:100777468 771.541