Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0592 ATGGTTGGAAACGACGATGGTGGTGCTCGGAAAATATTCTGGCGCTCCGCCTCTTGGTCCGGCGAAGCGAGGAATGATTTCTCCGATCCAAATTCCGGCGACGTTCAGAATCGGCGGTTCCCTCTGCCACCGGTACCACTAACGCCTCGATCGCAGCAGCAAAGTTCCAAGTCACGGTCGTGCCTGCCGCCGCTGTCCATTTCTCGCCGGATCATGGAGGAGTGGCCGCAGGCGAGCTCTGATGATATCGGCGAGTGGCCGGAGCTGCCAACTACGCCTAGTGGTGGTGGAAGAGGTAATAGTAGTAGTAGTAGTAATGGTGAAAGATTGAAACTTGATTTGTCTTCAATTCAGAAGAATCTTGATAATATGAACAATAGTAATGGTAATAGTAGTGTTGGACTTGTGAAGAGGGATAAGATTGCTTTTTTCGATAAGGAATGTTCTAAGGTTGCAGATCATGTTTATCTTGGTGGTGATGCTGTTGCTAAAGATAGGGATATTTTGAAACACAATGGGATCACTCATGTTTTGAATTGTGTGGGTTTTGTGTGTCCTGAATATTTTAAGGCTGATTTTGTGTATAGGACATTGTGGTTGCAGGATAGTCCATCAGAGGATATCACTAGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGGGAACATTGTGGGAGGGTGTTTGTGCATTGTTGCCAAGGTGTGTCTAGGTCCACTTCTTTGGTCATTGCGTATCTTATGTGGAGAGAAGGACAGAGTTTCGATGATGCTTTTCAGTATGTTAAGGCGGCGAGAGGTATAGCCGATCCGAATATGGGTTTTGCTTGCCAGTTGTTACAGTGCCAGAAAAGGGTCCATGCAGTCCCTCTCAGCCCTAGCTCTTTGCTGAGGATGTATAGGATCACCCCACACTCATCGTATGACCCTTTGCATCTTGTCCCCAAAATGTTGATGGATCCATCTTCGTCTGCGCTGGACTCTAGAGGTGCATTTATTGTGCACATTCCTTCTGCGATATATGTTTGGATTGGTAAGAATTGTGTGGCCATTATGGAAAGGGATGCTAGAGGGGCTGTGGGTCAGATCGTTCGCTATGAGAAAGTGCAAGGACCTATTGTAATGATTAAGGAAGGTGACGAGCCATCTTACTTTTGGGATACGTTTTCAAAGTTCTTGCCTCTGATGAACAAATCTGGGAAAGGATTAGAAAGTATCAAATCAAGTGTTAAGGTTCGGCCTGGTGAGAGGAGAGTGGGCTCATATGATCTTGATTTTGAAGTTTTCAGAAGAGCTACTAAGGGAGGTATTGTGCCACCATTTACATCATCAGAGGATGAACATGAAACCCTTCTTCCTGCTAGAGAGAGTAGCTGGAGTGTGTTAAGGCGTAAACTTTCCTCCGCTACTATGAAGGAATTTGTCTCAGCCCCTAAGTTACCCTTTACAAGGGTTTATTCAGATTCCATGTTGTGCATTCATACATCAGCAAATTCATCTCCATCCCTGTCACTGTCGTCATCATCCTTATCATTATCATCATCATCATCATCATCATTTTCACCCTTCTATGTCTCTCCAAATTACATTTCTTCTGATTCAAGCATTCACCCAAAGTTTTTGTCAGAATTGACCCTGGGTTCTTCCTCTGAAGTTTTGGTTTCTGTTCCAGTGTCTTCACCTATCTCTACCTTCTCTAATTTGTCTCTCTCTTCAAAACCAGTGTCTAACAGTGCAGAAATCCGTGGTGTGAAGTTATCAGACCCTCACTCTCAGTCAGCCTTACCATTGAAAAAACCATCTACTTCCCTTGCTGAACGAAGGGGTAGTTTGTCGAAGTCCTTGAAGTTGCCATTAATGAATGATAATACACGAGAAATAAATACAGCATTGACTTTTCATGTCAGTCGAGAAGCTGAAGTTCTTATGAATGGCAATGTGAGCCATTTACAACAGTCAGATAGTTCAGACCATTTTTATGAGGCCAACGACCATCTCAATGATACAGGTGTGAATGTTCCTCAACAGTGTAAGCTGACATTATGTCCGGGCAATGTTGATGGTGTGGACTTCAAGGAATCCTCACTTGTTCGAGACTGTATTGAGCCTTTGATAGATACTCCCTCAAGAGAAGACTTAGAGTCTAGTTCATCAAATGGAATTGATGAGAGTGGATTATTGCAGCATAGTATGACACAAACTTTAGTGTATCACTGGCCCGGTTTAGAAAAGATTGAGACATTCAGTGCAAGTCATCTGGATTCTAAAGTTGCTTTTGTTGTGTTCACTCCAAGTATGCCTGCAATTCCAGGGAATGTTTTATATTTCTGGTTAGGGAGGTCTTTCAGTTGTGATACTTCACAGGTTCAGGTAGATAGTGATAGAGAGTCAAATTTTCTAAGAGCAGTTGACTGGAATCAAATTGGTGGTGACGTCCTTACTCGGTTTAGTTTGCCAAAGAATACAATCATAAAGGAGGCTGCTACTTGTCAAGTCCATTGTCGATCGGCTTATTGTACAGTGCTTTTAACACCCTCAACCTAG 2547 0.4315 MVGNDDGGARKIFWRSASWSGEARNDFSDPNSGDVQNRRFPLPPVPLTPRSQQQSSKSRSCLPPLSISRRIMEEWPQASSDDIGEWPELPTTPSGGGRGNSSSSSNGERLKLDLSSIQKNLDNMNNSNGNSSVGLVKRDKIAFFDKECSKVADHVYLGGDAVAKDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREHCGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAVPLSPSSLLRMYRITPHSSYDPLHLVPKMLMDPSSSALDSRGAFIVHIPSAIYVWIGKNCVAIMERDARGAVGQIVRYEKVQGPIVMIKEGDEPSYFWDTFSKFLPLMNKSGKGLESIKSSVKVRPGERRVGSYDLDFEVFRRATKGGIVPPFTSSEDEHETLLPARESSWSVLRRKLSSATMKEFVSAPKLPFTRVYSDSMLCIHTSANSSPSLSLSSSSLSLSSSSSSSFSPFYVSPNYISSDSSIHPKFLSELTLGSSSEVLVSVPVSSPISTFSNLSLSSKPVSNSAEIRGVKLSDPHSQSALPLKKPSTSLAERRGSLSKSLKLPLMNDNTREINTALTFHVSREAEVLMNGNVSHLQQSDSSDHFYEANDHLNDTGVNVPQQCKLTLCPGNVDGVDFKESSLVRDCIEPLIDTPSREDLESSSSNGIDESGLLQHSMTQTLVYHWPGLEKIETFSASHLDSKVAFVVFTPSMPAIPGNVLYFWLGRSFSCDTSQVQVDSDRESNFLRAVDWNQIGGDVLTRFSLPKNTIIKEAATCQVHCRSAYCTVLLTPST 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0592 848 MobiDBLite consensus disorder prediction 586 609 - -
Lal18g0592 848 SMART dsp_5 147 286 IPR020422 GO:0006470|GO:0008138
Lal18g0592 848 ProSitePatterns Tyrosine specific protein phosphatases active site. 231 241 IPR016130 GO:0016311|GO:0016791
Lal18g0592 848 MobiDBLite consensus disorder prediction 21 35 - -
Lal18g0592 848 Pfam Dual specificity phosphatase, catalytic domain 155 285 IPR000340 GO:0008138|GO:0016311
Lal18g0592 848 MobiDBLite consensus disorder prediction 21 62 - -
Lal18g0592 848 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 206 267 IPR000387 GO:0016311|GO:0016791
Lal18g0592 848 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 829 - -
Lal18g0592 848 PANTHER MKPA PROTEIN 1 829 - -
Lal18g0592 848 CDD DSP 148 282 - -
Lal18g0592 848 Gene3D Severin 296 394 IPR029006 -
Lal18g0592 848 Gene3D Protein tyrosine phosphatase superfamily 118 289 IPR029021 -
Lal18g0592 848 SUPERFAMILY Actin depolymerizing proteins 296 403 - -
Lal18g0592 848 MobiDBLite consensus disorder prediction 94 108 - -
Lal18g0592 848 MobiDBLite consensus disorder prediction 77 108 - -
Lal18g0592 848 ProSiteProfiles Dual specificity protein phosphatase domain profile. 147 289 IPR020422 GO:0006470|GO:0008138
Lal18g0592 848 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 141 288 IPR029021 -
Lal18g0592 848 MobiDBLite consensus disorder prediction 595 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0592 Lal-Chr18 5040695 5045927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0592 2 183 Protein tyrosine phosphatase (PTP) family AT3G55270 54.315 5.82e-52 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0592 - - mtr:MTR_7g023250 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0592 18 5040695 5045927 Lal22g1343 22 16341914 16346951 LSH
Lal18g0592 18 5040695 5045927 Lal6g1675 6 19530722 19532990 LSH