Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0169 ATGGGATATGATGATGATGTTGATGATGACATGTACCACCACCATCACAAGAACCTTTCTACTTCTCAGGATGATGTCTCTTTTTTTCTTCGTCAGATTCTTCTCCCTTCATCATTTTCTTCTTCTTCTTCTTCACATTTCCACAACTCTAACTTCAACCATTATGACAACAAGATCTTCTCAGCTGGACCTGGTGGAACCACTAATTCAAGGGCAACTCACATTTCCATCAAGGGCCAAGAAGCAATCATTGAGAATGACACTGATTGTGAAAGTGAGGACTGCGTTGAAGCATTGGCAGAAGAAGTTCCAACAAAGTCAGGTCCTTCTAGGAGTTCATCAAAAAGGAGCAGAGCAGCAGAAGTTCATAATTTATCTGAAAAGCGAAGAAGGAGTAGGATCAATGAAAAAATGAAGGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTCGATGAAGCTATTGATTACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGATTAAGTCCACATCCAATGTGCTTTCCTGAAGGCTTGCAGCCTCTGCAATTGTCTCAGATGAATATGGAATTGGGTGAAGAAAACAGGTCTATCCCTTTAAACATGGCAGCTACTCTGCCTATGCACCAAGGGAACCCCTTGAACTATGCATCATCTAATCTACCTAACCAACACACCGTGCATAATCCTCCATCAGTGCCTTATCCTTCATATATTAACAACTCAGAAGCTTCTTTCGATCTGGAATCCCCAGTCCTATCAAATATAAAACCTCTTCAACCTAGAAGATCTTCTGAGATATGTAGGGAATACATGTTGCAGCATCAGCAATCAAATGCAAGCTATTCGGATGCCAATCTATTATCTAGTTCTCAAGTTATCAAAGAATTGGAGTCGGGCAAAAATGCGGTATCACTATCCTTTGACATGCAGACATCCGAAGCTAAGGACAATAGCTCTTTGCAAACATGCATTGCTGAAAGAGAACAATCAGGAGTGATCCTGAGAAACAGTAAACCCAACATCATTTGTACATCACAGTTAAGTAGTTAA 1089 0.4022 MGYDDDVDDDMYHHHHKNLSTSQDDVSFFLRQILLPSSFSSSSSSHFHNSNFNHYDNKIFSAGPGGTTNSRATHISIKGQEAIIENDTDCESEDCVEALAEEVPTKSGPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIDYLKQLQLQVQMLSMRNGLSPHPMCFPEGLQPLQLSQMNMELGEENRSIPLNMAATLPMHQGNPLNYASSNLPNQHTVHNPPSVPYPSYINNSEASFDLESPVLSNIKPLQPRRSSEICREYMLQHQQSNASYSDANLLSSSQVIKELESGKNAVSLSFDMQTSEAKDNSSLQTCIAEREQSGVILRNSKPNIICTSQLSS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0169 362 CDD bHLH_AtPIF_like 119 180 - -
Lal15g0169 362 Pfam Helix-loop-helix DNA-binding domain 122 168 IPR011598 GO:0046983
Lal15g0169 362 PANTHER TRANSCRIPTION FACTOR SPATULA 20 296 - -
Lal15g0169 362 MobiDBLite consensus disorder prediction 101 130 - -
Lal15g0169 362 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 296 IPR031066 -
Lal15g0169 362 Gene3D - 112 177 IPR036638 GO:0046983
Lal15g0169 362 MobiDBLite consensus disorder prediction 116 130 - -
Lal15g0169 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Lal15g0169 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 182 IPR036638 GO:0046983
Lal15g0169 362 SMART finulus 124 173 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0169 Lal-Chr15 1194555 1197924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0169 86 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 47.945 1.79e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal15g0169 HLH 6.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0169 - - var:108334706 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0169 15 1194555 1197924 Lal15g0169 15 1194555 1197924 ECH