Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0301 ATGGTGGGGCATAAGAATACTGAAATTACCAAGTTGTTAATGGCATCAACATCTGGTGCTAGTAAGAGTCTATTACCAATGAAAGAAGCAGTACCAGCTTCGAGCTATCGTGCATATCCTGCCCCTCTTGCAAAATATGAGGAAGTTGTAGAGAATCCCAAGACCTTCATGTTTACCTTGGAGAAGCTCCATGCAGATATGGGTACCAAGTTCATGATTCCCACTATTGGGGGAAGAGAACTAGATCTGCATCACCTTTTTGTTCAAGTGACTTCTCGTGGAGGGCTTGAGAAGATAATTAGAGATAGAAAATGGAAAGAAGTAACTGCAGCTTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGCTGCGGAAGTATTATACTTCTTTGCTTTTCCATTATGAACGAATGTACTACTTTAAATCCCCTGGATGGGCCCCTCCTACTACTTATGATGCTCTGCAGAGTCAATCAACCATGCCATCTCCTGTTCAAAAGATGCAGTCTCCGCAGCTTCAGTTAGGAATTCAGTCACCTGCCTTTCATCATTCAAGTTCCAATGTTGCTAAAATGCCTGAAGCGATGGCAGCATCTTTGGCAGGTTCTGCAGTCATCGGGGTCATTGATGGGAAATTTGAAAGTGGTTATCTAGTTACTGTCACAATAGGTTCGGAGAAACTCAAAGGGGTTCTTTATCAAGCTCCACAGAACCCCACATTTTCAGCATTCCATCCCATTGTTTTGGCTAATAACGACAATTTCTCTGCTTCATTGGGTGTCAATCGTCGCCGACGCAGGAAGAAATCAGAAATAAAACGGAGAGATCCTGCTCACCCAAAACCCAACAGAAGTGGTTACAACTTCTTCTTTGCAGAACAACATGCAAGACTAAAATCACTTCACCAAGGGAAGGACAGGGACATTAGTAGGGTGATTGGTGATCTCTGGAACAAGTTAAACGAATCGGAAAGAACAGTTTATCAAGAGAGGGCTGTGAAGGATAAAGAGAGGTACAAAGCAGAAATGGAAGATTATCGCAAGAAACTGAAGACAGGTCAATTTATCAGTGATGCTGTGCCGCTGCAACAAAGACTTCCTGAACAAGATACTGACATGGTTGATGCTGAAGCTGAGGCAGACTCTTTCCAAACTCCGGAGGAGAGCAGTTCTTATGAAAGCGAATATGAAGATGGTAGAATGACGGAGAATGATTTGCATCACATGCTATAG 1236 0.4264 MVGHKNTEITKLLMASTSGASKSLLPMKEAVPASSYRAYPAPLAKYEEVVENPKTFMFTLEKLHADMGTKFMIPTIGGRELDLHHLFVQVTSRGGLEKIIRDRKWKEVTAAFNFPSTATNASFVLRKYYTSLLFHYERMYYFKSPGWAPPTTYDALQSQSTMPSPVQKMQSPQLQLGIQSPAFHHSSSNVAKMPEAMAASLAGSAVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPTFSAFHPIVLANNDNFSASLGVNRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKSLHQGKDRDISRVIGDLWNKLNESERTVYQERAVKDKERYKAEMEDYRKKLKTGQFISDAVPLQQRLPEQDTDMVDAEAEADSFQTPEESSSYESEYEDGRMTENDLHHML 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0301 411 MobiDBLite consensus disorder prediction 364 411 - -
Lal13g0301 411 SMART bright_3 51 142 IPR001606 GO:0003677
Lal13g0301 411 MobiDBLite consensus disorder prediction 261 287 - -
Lal13g0301 411 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 281 348 IPR009071 -
Lal13g0301 411 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 13 398 - -
Lal13g0301 411 Coils Coil 330 350 - -
Lal13g0301 411 SMART ARID_2 47 137 - -
Lal13g0301 411 CDD ARID_HMGB9-like 52 137 IPR045303 GO:0003677
Lal13g0301 411 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 398 - -
Lal13g0301 411 Pfam ARID/BRIGHT DNA binding domain 54 137 IPR001606 GO:0003677
Lal13g0301 411 Gene3D - 39 146 IPR036431 GO:0003677
Lal13g0301 411 SUPERFAMILY HMG-box 269 353 IPR036910 -
Lal13g0301 411 SUPERFAMILY ARID-like 48 149 IPR036431 GO:0003677
Lal13g0301 411 MobiDBLite consensus disorder prediction 394 411 - -
Lal13g0301 411 SMART hmgende2 280 349 IPR009071 -
Lal13g0301 411 Pfam HMG (high mobility group) box 281 348 IPR009071 -
Lal13g0301 411 Gene3D High mobility group box domain 265 360 IPR036910 -
Lal13g0301 411 CDD HMGB-UBF_HMG-box 281 345 - -
Lal13g0301 411 ProSiteProfiles ARID domain profile. 50 141 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0301 Lal-Chr13 1852252 1856236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0301 14 378 ARID Transcription Factor Family AT1G04880 57.713 7.50e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal13g0301 ARID 2.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0301 - - gmx:100783284 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0301 13 1852252 1856236 Lal24g0246 24 1752128 1756282 LSH