Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01608 ATGGCTCTCTTCCGAAGATTCTTTTACCGGAAACCACCGGATCACCTCCTCGAGATCTCCGACAGACTCTATGTTTTTGATTGTTGCTTCTCCAAGAATGTGTTGGAGGAAGAGGAGTACAAGGCTTATATTGGGGGGATAGTGGCTCAGCTACAGGATCACTATCCGGATGCTTCTTTCATGGTGCTCAATTTCAGAGAAGGAGATAGGCGCAGTCGAATTTCAGACATTATGTCTCAGTATGAGATGACAGTTATGGAGTACCCTCGGCAATATGAGGGTTGTCCACTTTTGCCTTTGGAGATGATTCACCACTTCCTTCGGTCAAGCGAGAGTTGGCTGTCTTTGGAGGGGCAACAAAACGTGCTTTTGATGCACTGTGAAAGAGGCGGATGGCCTGTGCTCGCATTTATGCTAGCTGGTCTTCTATTGTACAGGAAACAATACAATGGGGAACACAAGACTCTTGAAATGGTGTACAAGCAAGCACCTAGAGAACTTGTCCACCTTTTATCTCCTTTGAATTCACAACCTTCTCATTTGAGATATCTTCAGTACATTTCCAGGAGGCATTTGGGTTCCGTGTGGCCTCCACCAGATACACCCTTATATTTGGATTGCCTCATTCTTAGAGTCCTTCCATTATTTGATAGTGGAAAAGGTTGCAGGCCGGTTGTGCGTGTCTACGGTCCAGACCCTTCAAAACCTTCCAACAGAAGTTCTAAGCTTCTTTTCTCAACTTCAATGACCCCAAATCATGTTCGCCACTACCAGCAGGCAGAATGTATGCTCGTGAAAATTGACATCCATTGTCATGTTCAAGGAGATGTGGTTCTTGAGTGCATACATTTAGGTGAAGATTTTGTTCGTGAGGAGATGATGTTTAGAGTCATGTTTCATACTGCGTTTGTACAGTCAAATATACTGATGCTGAGGCATGATGAAATTGATATTCTGTGGGATGCAAAGGATCAGTTCCCCAAGGACTTCAAATTAGAGGTGCTTTTTTTGGATGCTGATGCTGTTATACCTAATCTAACCACATTCAATGTGAGTGGAGATGCAAATGACACAGAATGTGCTTCACCTGAGGCTGAGGAATTCTATGAAGCAGAAGAGATCTTCAGCAATGTAATTGATGCACAGGAAGGTAAGGGGGATTACGATTCTCCAATGGTTATTAATGATGGAAGTCATAAAGAGCTCTGGAAAGAGTATTCAGATCCTCATACTTTTCAGGATTCTGTGTTAGATGATGGAATTCACCAACAGCTTGATTATGTGAAGTACCAGCTTGACAAGAGGGTGGTTTCAGATACTCATGCTGTGAAAGATATTGGTGTGGATTATGGAGTCACTTTTATGACAAAGGAAGTCAGTGTGGATGTGCATGATGAGTTGTCAGTTAACATTGAAAAGAAACAACTTCCTTCAAACTCAAAGCCAGTGGGAGATACAGTTGTAGCAAAGCAAAAGACTAAACACCAAGAACCACTTGGTTTTCTGGCAAAACACGCAAAACCCGATGCAACTAGGTGGATTCCTTCTAATAAGGGTTCTTATCAAGATTCAATGCATGTCTCATATCCACCATCAAGGAATATTAATTCAGCGGCTACTCCGTCAAATGTTACCTCTGCAAAAGATAAAATCACTGATGCCAAAGGAAAATCTACTTCTGGTTCTCATGTCGCTGCAGTAATTGTTTCTATGGACATGGCAAATGACCTGAAAAGTTGTACAGGGGATAACTCAAAATCTTCAGGCAGCATAGCTGAAGTAGACTCAAACTCTTCACCACCATCATTACTGTCAGTCAAAGAGACGTCTCTTCAGTCAGAGACTCAAACACCACAACAGAGCTACAATCAAATGTTACAACTTCATCCTCCACCTCCTCCTCCACCTCCATTTTTTGGGAAAAATAGAGGGAGCTTCATAACTCCTACCCAATGGAAATCTTTTTATCCATCCATTGCCATAGTTGGACAAAATAGTGGTGCTTTAGCTCCTCCTTCCCTGGCTCCTTCCATTGCAAGTGGTGCAACTACATCAAAAGTTTCTGAATTACTTGATGCAGTTTCTGTTTCCTGTCCTCCACCATCACAACCACCACCACCACTTCCTCCTCCTCCTCCTCCTCCTATGTCGTCTACAATTAGAGCTCCAGTGCCTCCTCCTTCAATATCTCCAACATCATTTAAAACTCCACCTCCAGCACCCCCACTGCCACATCCACCTTctcctcctttaagtaaatctacaccactgcctcctcctcctttaagtactgctccaccaccacctcctcctcctcctttaagtactgctcctccaccaccacctcttcctccATCAAGTGGAGTGCCACCTCCTTCATTGTCTAGAGCCCCACCTCCCCTGCCTCCACCAACTTGTGGACCACCACCACCTTCAATGCATGGAGGCACACCTCCTCCACCACCTCCAAGTGGTCGAGGCCCACCTCCTACTGGATATCGGGCTCCTGCTGCTCCTGCTCCTTTTGGATCTCTAGGTGGGGCTCCTTCTCCATCACCACCTGGAACTGATCCAAGAGGGAGAGGGCGTGGACTTACACGTCCTACGGGAGCTGGTGCCATGGCAGCTCGGCGGTCCTCCTTAAAGCCTCTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGATGAATTACAAAGACGTGGAGACCCTCTAATAACACAAGAGTTTGACGTTTCAGAGATAGAGAAGCTTTTTTCTGCAAATGTTCCAAAACCTGCTGATTCAGATGGTAAATCTGGAGGGCGACGCAAATCTGTTGGATCCAAAACTGACAAAATCCACTTGATTGACCTTAGGAGGGCCAATAATACTGAAATTATGCTCACGAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGATTCGGTGTTAGATGTCGATCAGTTGGAAAATCTCAGTAAATTTTGTCCTACCAAAGAGGAGATAGAGCTTTTAAAGGGATACACCGGTGATAAGGAGAATTTGGGGAGGTGTGAAAAGTATTTTTTGGAGCTGATGAAAGTGCCAAGAGTGGAGTCAAAATTCAGAGTATTCTCTTTCAAGATTCAGTTTAGGACTCAGATTACAGAGTTTAAGAAGAGTTTAAACACAGTGAACGCTGCCTGTGAAGAGGTCCGAAACTCGTTCAAACTGAAGGAGATTATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAACAAGGGGATCTGCTGTTGGATTCAAGTTAGATAGTCTTTTAAAACTAACCGAAACTCGTGCTTCAAACAGTAAAATGACACTAATGCATTTTCTTTGCAAGGTCCTAGCTGACAGGTTTCCCGGACTCCTTGATTTTCACCTTGACCTTGTAAACCTGGAAGCAGCCACTAAGATACAATTGAAATCATTAGCAGAAGAAATGCAGGCAATCATCAGGGGATTAGAAAAGGTTAAACAGGAGCTTGTTGCATCTAAAAATGATGGCCCCGTGTCTGAAGTTTTTCGTAAGACATTGAAGGAATTCATTGCTGTTGCAGAGTCAGAGGTGGTATCCGTAACAAACCTATATTCTGTGGTGGGTAGAAATGCAGATGCACTTGCCCTATATTTTGGTGAGGATCCTTCCCGTTGTCCTTTTGAGCAAGTTACTGCAACTCTCTTCAATTTTACAAGGTTGTTTCTGAAAGCACATGAACAGAATTGCAAGCAAGCGGAGTTAGAGAAAAAGAAAGTGGAGAAAGAGGCTGAAATGGAGAAGGCTAAAGGCATTAACTTGATAAGGAGGAGTGGGAAATATGAAGAAGAAGAAAGCTGA 3873 0.4222 MALFRRFFYRKPPDHLLEISDRLYVFDCCFSKNVLEEEEYKAYIGGIVAQLQDHYPDASFMVLNFREGDRRSRISDIMSQYEMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEHKTLEMVYKQAPRELVHLLSPLNSQPSHLRYLQYISRRHLGSVWPPPDTPLYLDCLILRVLPLFDSGKGCRPVVRVYGPDPSKPSNRSSKLLFSTSMTPNHVRHYQQAECMLVKIDIHCHVQGDVVLECIHLGEDFVREEMMFRVMFHTAFVQSNILMLRHDEIDILWDAKDQFPKDFKLEVLFLDADAVIPNLTTFNVSGDANDTECASPEAEEFYEAEEIFSNVIDAQEGKGDYDSPMVINDGSHKELWKEYSDPHTFQDSVLDDGIHQQLDYVKYQLDKRVVSDTHAVKDIGVDYGVTFMTKEVSVDVHDELSVNIEKKQLPSNSKPVGDTVVAKQKTKHQEPLGFLAKHAKPDATRWIPSNKGSYQDSMHVSYPPSRNINSAATPSNVTSAKDKITDAKGKSTSGSHVAAVIVSMDMANDLKSCTGDNSKSSGSIAEVDSNSSPPSLLSVKETSLQSETQTPQQSYNQMLQLHPPPPPPPPFFGKNRGSFITPTQWKSFYPSIAIVGQNSGALAPPSLAPSIASGATTSKVSELLDAVSVSCPPPSQPPPPLPPPPPPPMSSTIRAPVPPPSISPTSFKTPPPAPPLPHPPSPPLSKSTPLPPPPLSTAPPPPPPPPLSTAPPPPPLPPSSGVPPPSLSRAPPPLPPPTCGPPPPSMHGGTPPPPPPSGRGPPPTGYRAPAAPAPFGSLGGAPSPSPPGTDPRGRGRGLTRPTGAGAMAARRSSLKPLHWSKVTRALQGSLWDELQRRGDPLITQEFDVSEIEKLFSANVPKPADSDGKSGGRRKSVGSKTDKIHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDDSVLDVDQLENLSKFCPTKEEIELLKGYTGDKENLGRCEKYFLELMKVPRVESKFRVFSFKIQFRTQITEFKKSLNTVNAACEEVRNSFKLKEIMKKILYLGNTLNQGTTRGSAVGFKLDSLLKLTETRASNSKMTLMHFLCKVLADRFPGLLDFHLDLVNLEAATKIQLKSLAEEMQAIIRGLEKVKQELVASKNDGPVSEVFRKTLKEFIAVAESEVVSVTNLYSVVGRNADALALYFGEDPSRCPFEQVTATLFNFTRLFLKAHEQNCKQAELEKKKVEKEAEMEKAKGINLIRRSGKYEEEES 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01608 1290 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Gma04g01608 1290 SMART PTEN_C2_2 198 338 IPR014020 -
Gma04g01608 1290 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Gma04g01608 1290 SMART it6_source 871 1290 IPR015425 -
Gma04g01608 1290 Gene3D Formin, FH2 domain 872 1258 IPR042201 -
Gma04g01608 1290 MobiDBLite consensus disorder prediction 579 644 - -
Gma04g01608 1290 Coils Coil 1247 1276 - -
Gma04g01608 1290 MobiDBLite consensus disorder prediction 925 945 - -
Gma04g01608 1290 MobiDBLite consensus disorder prediction 698 836 - -
Gma04g01608 1290 ProSiteProfiles Formin homology-2 (FH2) domain profile. 871 1272 IPR015425 -
Gma04g01608 1290 Coils Coil 1153 1173 - -
Gma04g01608 1290 MobiDBLite consensus disorder prediction 579 626 - -
Gma04g01608 1290 Gene3D Protein tyrosine phosphatase superfamily 13 201 IPR029021 -
Gma04g01608 1290 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Gma04g01608 1290 CDD PTP_PTEN-like 16 190 - -
Gma04g01608 1290 Pfam Formin Homology 2 Domain 878 1246 IPR015425 -
Gma04g01608 1290 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 188 IPR029021 -
Gma04g01608 1290 PANTHER FORMIN-J 1 1275 - -
Gma04g01608 1290 Gene3D - 203 336 - -
Gma04g01608 1290 MobiDBLite consensus disorder prediction 695 879 - -
Gma04g01608 1290 SUPERFAMILY Formin homology 2 domain (FH2 domain) 948 1274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01608 Gma-Chr4 43771692 43793973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01608 1 547 FH2 protein (formin) Gene Family AT5G07740 60.399 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01608 - - gmx:100815561 1420.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01608 04 43771692 43793973 Gma04g01608 04 43771692 43793973 ECH