Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01400 ATGCATAATAATGAAGATACACACAGAGGTTTGAAAAGAAAGCCCCCACATATGGATCGAGGGCAAGAACGGAGGCCATACAATACGAATTCTAGACCTTATGATCGGAACACGGTTCCTGATGGTTGGTTAGACTGCCCACCACATGGGCAAGAAATAGGATGTATAATCCCTTCGAAGGTTCCACTTGGTGATTCCTTCAATGATTACATTCCAAGTCAAAAATATGCTCCCAAGCAAGCAATTCATCAACAAAGAGTCTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGCTACTATCCTGTATCAGATTGGACAAAAGAAGGGATTGGTCATGTCAAGATAAGATGCACAGGAAGAGATGCTGTACCTGATGATGAATCCGTAAAATTCTTTTGTGATAAGGTTCTGGATTTTTGCTCCCAAAGAACAAACACAAAGAAATATATACTTGTACATTGCACACATGGGCATAATCGTACAGGTTATATGATTGTTCACTTTCTTGTGCGCACGGAATCTCTTTCTGTTACTGAGGCGATAAATAAATTTGCTTGTGCACGTCACCCAGGAATTTACAAGCAGGACTACATTGATGCCCTTTACATGTTTTATAATGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGAATTTCTGATCCTGATTTTCATGGCACAGCTGTTCCAGCTGTGGACAATAGTGCACACATTCCTGAACAGGAGAGAATTGTGAGGAATGAGGTATTAACAAGTGATGATGCTTTGGGAGATCCAATTCCTCCAAACCAGCTGCGTCCAATGCAAGAACTTTGTTATCAACTGCTCAAGTTGGGCACAGGGGGAAGAGGACGCTCGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGACAATCTGCAACTCTTAAGACAAAGATATTACTATGCCACGTGGAAAGCTGATGGGACACGATATATGATGCTGATTACTTGCGATGTATGTTATCTGATTGACAGAAAATTCTTTTTCCAAAGGATCAATATGCGATTTCCTTGCAGATATACTAATGGGGGTACACCCGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACAGATCCGCATACACATAAGCAAGAGAGAAGATACCTCATTTATGATTTGATGGCTATCAATCAAGTTTCTTTGACAGAGCTGCCCTTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGCGAGGGCCTCTCAAAGAGTATAAATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTGCTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTATCACATTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTCTGTGAGGTTGTGGGAGCTGGAGATCGTCCCTTGCTTTTTCTATTTGAACGTGGAAGGAAGAAGTTAATGGAGGAGAATGTTATTTTTAAAGATGCATCGGACATTTCTTCCTATTCAGGGAAGATCATTGAATGCTACTGGGATTCCGCGGAGCATCATTGGGTTTGTATGCGGATCAGAATAGACAAAGCCGCTCCAAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGAGGTCTTATTGAATGAGATCAATCAGATCATTCGCCTACCCTTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGCATATGATCTCTTCGCGGCGCAACAAGCAAACCAAAATGCCTCCTCCTCTTCCATCTCTCTGCAACTTCAACTTGGCGATACTCTTCCTCTTCCTCACACCCACTTTCCAAATCCCCCTCATAGCCCCAATCTCAAAAGACGACACCACCCAACTCTACACTCTCTCCGTGTTCCTGAAAACCCCACTCCAACCCACAAAACTCCACCTCCACCTTGGCTCCTCCCTCAGCTGGGTCCTCTGCGACTCCACCTACACCTCCTCCTCCTCCCACCACATCCCCTGCAACACCCCTCTCTGCAACTCCTTCCCCTCCAACGCATGCTCCAACAACTCCTCCCTCTGCGCCCTCTTCCCCGAAAACCCCGTCACAAGAAACACCCTCCTGGACACCGCCCTCATCGATTCCCTCGCTCTTCCCACCTACGACGCTTCCTCCTCTCTCGTCCTCATCTCCGACTTCATCTTCTCCTGCGCCACGGCCCATCTTCTCCAGGGCCTCGCCGCCAATGCATTGGGCCTCGCCTCATTGGGCCGGTCCAACTACTCCCTCCCGGCCCAAATCAGCACTTCATTAACCTCACCTCGTTCTTTCACTCTCTGCCTGCCAGCTTCATCAGCCAACACAGGGGCAGCTATATTCGCCTCCACTGCCTCCTCATTTCTTTTCTCTTCCAAAATTGACCTTACTTACACACAACTCATCGTAAACCCCGTTGCCGACACCGTCGTCACCGACAATCCACAACCGTCTGATGAGTATTTCATAAACTTAACCTCAATCAAAATCAACGGTAAGCCTCTTTATATCAACTCCTCCATCCTCACCGTTGATCAGACCGGCTTCGGTGGGACCAAGATAAGCACTGCGGAACCCTACACTGTTTTAGAAACTTCTATTTACAGACTATTTGTTCAGCGTTTTGTGAACGAGTCCTCTGCTTTTAACTTGACGGTGACGGAAGCAGTTGAGCCGTTTGGCGTGTGCTACCCTGCGGGGGATCTCACGGAGACACGAGTTGGACCCGCGGTGCCCACCGTTGATCTGGTGATGCACAGCGAGGACGTGTTCTGGAGAATCTTTGGCGGGAATTCGATGGTGAGGGTTGCGAAGGGAGGAGTGGATGTGTGGTGTTTGGGTTTTGTGGACGGTGGGACCCGCGGGAGAACTCCCATTGTAATCGGAGGGCATCAGTTGGAGGATAATTTAATGCAGTTTGATCTTGACTCAAATAGATTCGGTTTCACTTCGACTCTCTTGCTTCAGGATGCCAAATGTTCTAATCTCAAGGTCAATAATTTTGCAAATGGAATTAAATAA 3186 0.457 MHNNEDTHRGLKRKPPHMDRGQERRPYNTNSRPYDRNTVPDGWLDCPPHGQEIGCIIPSKVPLGDSFNDYIPSQKYAPKQAIHQQRVLGRELGLVIDLTNTTRYYPVSDWTKEGIGHVKIRCTGRDAVPDDESVKFFCDKVLDFCSQRTNTKKYILVHCTHGHNRTGYMIVHFLVRTESLSVTEAINKFACARHPGIYKQDYIDALYMFYNEKKPEDLVCPQTPEWKRISDPDFHGTAVPAVDNSAHIPEQERIVRNEVLTSDDALGDPIPPNQLRPMQELCYQLLKLGTGGRGRSFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITCDVCYLIDRKFFFQRINMRFPCRYTNGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLMAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLSKSINPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVVGAGDRPLLFLFERGRKKLMEENVIFKDASDISSYSGKIIECYWDSAEHHWVCMRIRIDKAAPNDINTYRKVMRSIKDNITEEVLLNEINQIIRLPLYADRIQRDIKAHQHMISSRRNKQTKMPPPLPSLCNFNLAILFLFLTPTFQIPLIAPISKDDTTQLYTLSVFLKTPLQPTKLHLHLGSSLSWVLCDSTYTSSSSHHIPCNTPLCNSFPSNACSNNSSLCALFPENPVTRNTLLDTALIDSLALPTYDASSSLVLISDFIFSCATAHLLQGLAANALGLASLGRSNYSLPAQISTSLTSPRSFTLCLPASSANTGAAIFASTASSFLFSSKIDLTYTQLIVNPVADTVVTDNPQPSDEYFINLTSIKINGKPLYINSSILTVDQTGFGGTKISTAEPYTVLETSIYRLFVQRFVNESSAFNLTVTEAVEPFGVCYPAGDLTETRVGPAVPTVDLVMHSEDVFWRIFGGNSMVRVAKGGVDVWCLGFVDGGTRGRTPIVIGGHQLEDNLMQFDLDSNRFGFTSTLLLQDAKCSNLKVNNFANGIK 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01400 1061 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 291 500 - -
Gma03g01400 1061 Pfam Xylanase inhibitor C-terminal 875 1038 IPR032799 -
Gma03g01400 1061 Pfam mRNA capping enzyme, C-terminal domain 536 598 IPR013846 -
Gma03g01400 1061 PANTHER MRNA-CAPPING ENZYME-LIKE 3 629 - -
Gma03g01400 1061 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 39 227 IPR029021 -
Gma03g01400 1061 Pfam mRNA capping enzyme, catalytic domain 301 499 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gma03g01400 1061 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311|GO:0016791
Gma03g01400 1061 MobiDBLite consensus disorder prediction 1 36 - -
Gma03g01400 1061 ProSiteProfiles Peptidase family A1 domain profile. 675 1038 IPR033121 -
Gma03g01400 1061 SUPERFAMILY Acid proteases 668 1042 IPR021109 -
Gma03g01400 1061 CDD RNA_5'-triphosphatase 42 208 - -
Gma03g01400 1061 CDD Adenylation_mRNA_capping 273 500 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gma03g01400 1061 Pfam Dual specificity phosphatase, catalytic domain 90 211 IPR000340 GO:0008138|GO:0016311
Gma03g01400 1061 MobiDBLite consensus disorder prediction 1 30 - -
Gma03g01400 1061 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 135 204 IPR000387 GO:0016311|GO:0016791
Gma03g01400 1061 SMART dsp_5 42 212 IPR020422 GO:0006470|GO:0008138
Gma03g01400 1061 Gene3D DNA ligase/mRNA capping enzyme 261 497 - -
Gma03g01400 1061 Gene3D Protein tyrosine phosphatase superfamily 14 233 IPR029021 -
Gma03g01400 1061 Gene3D - 498 607 IPR012340 -
Gma03g01400 1061 Pfam Xylanase inhibitor N-terminal 675 836 IPR032861 -
Gma03g01400 1061 Gene3D Acid Proteases 841 1055 IPR021109 -
Gma03g01400 1061 SUPERFAMILY Nucleic acid-binding proteins 502 615 IPR012340 -
Gma03g01400 1061 Gene3D Acid Proteases 657 837 IPR021109 -
Gma03g01400 1061 CDD xylanase_inhibitor_I_like 681 1041 IPR033868 -
Gma03g01400 1061 PANTHER MRNA-CAPPING ENZYME 3 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01400 Gma-Chr3 40131170 40142054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01400 14 620 Protein tyrosine phosphatase (PTP) family AT3G09100 61.874 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01400 K13917 - gmx:100793183 1307.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01400 03 40131170 40142054 Gma19g02240 19 51117433 51118734 ECH
Gma03g01400 03 40131170 40142054 Gma03g02204 03 47406045 47407449 ECH
Gma03g01400 03 40131170 40142054 Gma03g01400 03 40131170 40142054 ECH
Gma19g01463 19 43852288 43867101 Gma03g01400 03 40131170 40142054 GST