Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3545 ATGGCAAGTTGTGAGTTCCCTACACCCCCTGTTTCCAAGCCGCAAGACACTGGTTTGAGGGGTGCACGTGACGCCCATAACTCACTTTCTTGTTCTCTCGTCATTGGTTGGGCGAGCGTGAACCAGGTTTCCCTAGCTGTAGCTCCTCAAGTTCAGGTGAAAATGTCTTCCTCAAGACCTAGCCAGTCATCCAGCAATTCAGGAAGATCGAGGCATAGTGCTAGAATTATTGCTCAGACCACTGTAGATGCAAAACTCCATGCAAATTTTGAGGAGTCTGGTAGCTCCTTTGACTACTCAAGTTCGGTGCGTGTTTCTGGTACAGTCAATGGAGACCATCAACAAAGGTCTGACAGGGTAACAACAGCTTACCTCCATCACATACAGAAAGGCAAGCTGATCCAGCCTTTTGGGTGCTTACTAGCCCTAGATGAGAAAACGTGCAAGGTTATTGCATACAGTGAGAATGCTCCTGAGATGTTGACCATGGTCAGTCATGCTGTGCCTAGCGTTGGTGAGCACCCTGCCCTTGGCATAGGCACGGACATAAGAACTATTTTCACTGGCCCAAGTGCTTCTGCATTGCAGAAGGCATTAGGATTCGGGGAGGTTTCACTTCTCAACCCCATCCTAGTCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACAGGAAGTTTGATCATTGACTTTGAGCCAGTCAAGCCTTACGAAGTTCCCATGACTGCAGCTGGTGCCCTTCAATCATACAAGCTTGCAGCCAAAGCAATTACCCGATTGCAATCTTTGCCCAGTGGGAGCATGGAAAGGCTATGTGATACAATGGTTCAAGAGGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGATGATCACGGGGAAGTAATTGCTGAGATCACGAAGCCTGGTTTAGAGCCATATCTGGGTTTGCATTACCCGGCCACTGATATCCCACAGGCTGCACGCTTTTTATTTATGAAGAACAAGGTCCGAATGATAGTTGATTGTCGTGCAAAACATGTGAAGGTGGTTCAAGATGAAAAACTTCCATTGGAGTTAACCTTGTGTGGTTCAACATTAAGGGCTCCTCATAGTTGCCATTTGCAGTATATGGAGAACATGAATTCAATAGCTTCCCTGGTCATGGCAGTTGTAGTCAATGACAGCGATGAAGATGGGGACAGCTCTGATTCTGTCCAGCCGCAGAAGAGAAAGAGACTTTGGGGTCTTGTAGTTTGCCATAACACTACGCCCAGGTTTGTTCCATTTCCTCTTAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAATTAGAGTTAGAATACCAGATTATTGAGAAAAATATCCTGCGCACCCAGACGCTCTTGTGTGATATGCTGATGCGAGATGCGCCCCTAGGTATTGTATCACAGAGCCCTAATATAATGGATCTTGTAAAATGTGATGGAGCTGCCCTCTTGTATAAAAACACGGTATGGAGATTAGGAGTAACACCAGGTGAATCCCAGATACGAGAGATAGCTTTATGGCTCTCCGAGAACCATATGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCTGGGTTCCCAGGTGCTCTTGCTCTTGGTGATATAGTATGCGGAATGGCAGCTGTGAGAATATCTCCCAAAGACATAGTTTTCTGGTTTCGGTCACATACCGCCTCAGAAATCCGATGGGGTGGTGCAAAGCACGAACCTGGTGAAAAGGATGATGTTAGGAGGATGCATCCAAGATCATCATTCAAAGCCTTCCTTGAAGTTGTGAAGTCAAGGAGCTTACCATGGAAGGACTACGAAATGGATGCTATCCATTCGCTGCAGCTAATCCTGAGAAATGCATTTAAAGATACAGAGAGTATGGATATAAACACCAATGCAATTAACACAAGATTAAGTGATTTGAAGATTGAAGGGATGCAAGAATTGGAAGCCGTGACAAGTGAGATGGTTCGGTTAATTGAAACTGCTACAGTGCCAATCTTGGCAGTTGACGTTGATGGGCTGGTCAATGGGTGGAATACAAAAATTTCTGAGTTGACAGGTCTTCCAGTTGATGAAGCTATTGGAAAGCATTTACTCACACTCGTTGAGGATTCTTCAACTGATAGGGTCAAGAAAATGCTGGACATGGCACTGCAAGGTAAAGAAGAGCAGAACGTCCAATTTGAGATCAAAACACATGCGTCTAAGGTTGATTCTGGTCCAATCAGTTTGGTTGTTAATGCTTGCGCAAGCAGGGACCTTCGAGATAATGTCGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAAACTGTTATGGACAAATTCACCCGAATAGAAGGTGATTACAAGGCAATTGTCCAGAACCGAAACCCATTGATCCCCCCAATATTTGGTGCAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCAATGACGAAGTTAACTGGATGGAAGCGAGAGGAAGTGATGGATAAAATGCTTTTAGGGGAGGTCTTTGGGACCCAGATGGCTTGTTGTCGTCTAAAGAATCAAGAAGCTTTTGTCAACTTTGGTATTACGCTAAATAAAGCCATGACCGGTTTGGAAACTGAGAAGGTTGCTTTTGGATTTTTTTCTCGGAACGGAAAGTATGTAGAATGCCTGCTTTCTGTGAGTACGAAGTTGGACATAGAGGGTGCAGTTACTGGGGTCTTCTGCTTCTTGCAGCTAGCTAGCCCGGAGCTGCAACAAGCTTTACATATCCAGCGCCTATCTGAACAAACTGCCTTTAAGAGACTGAAAGCTTTAACTTATATGAGAAGGCAGATACGGAATCCTTTATGTGGGATTGTGTTCTCCCGGAAAATGTTGGAGGGTACTGAGTTGGGAACTGAACAAAAACAACTTCTGCAAACCAGCGTCCAGTGCCAGCGCCAGCTCAGCAAAGTTCTTGATGACTCTGATCTTGACAAAATCATCGATGGGTACTTAGATCTGGAGATGGTTGAATTTTCTATGCATGATGTATTGATTGCCTCCCTCAGTCAAGTAATGACAAAGAGCAGTGCAAAGGGTATCCGATTAGTCAATGATGTTGCAGAGCATATCATGACAGAAACGTTATATGGTGACAGTCTTAGGCTTCAACAGGTCTTAGCTGACTTCTTATTGATTTCCATCACTTTTACACCGTCTGGAGGTAAGGTTGTTGTAGCAGCCTCTTTAACCAAGGATCAATTAGGACAATCTGTCCATCTTGCTAATTTGGAGCTCAGCATAACACATGCTGGTAGCGGGATTCCAGAAGCATTGCTGAACCAGATGTTTGGAAGTGATGGACAGGAATCAGAGGAGGGCATTAGCCTGCTCATCAGTAGAAAGCTGCTGAAGCTCATGAATGGAGATGTACGTTATCTAAGGGAAGCAGGCAAATCATCCTTTATCTTATCTGTTGAACTCGCTGCAGCCCATAAGTCGAGGGCTTAA 3537 0.4478 MASCEFPTPPVSKPQDTGLRGARDAHNSLSCSLVIGWASVNQVSLAVAPQVQVKMSSSRPSQSSSNSGRSRHSARIIAQTTVDAKLHANFEESGSSFDYSSSVRVSGTVNGDHQQRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGEHPALGIGTDIRTIFTGPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVVQDEKLPLELTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDSDEDGDSSDSVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNTVWRLGVTPGESQIREIALWLSENHMDSTGLSTDSLSDAGFPGALALGDIVCGMAAVRISPKDIVFWFRSHTASEIRWGGAKHEPGEKDDVRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKDTESMDINTNAINTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLPVDEAIGKHLLTLVEDSSTDRVKKMLDMALQGKEEQNVQFEIKTHASKVDSGPISLVVNACASRDLRDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNRNPLIPPIFGADEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGITLNKAMTGLETEKVAFGFFSRNGKYVECLLSVSTKLDIEGAVTGVFCFLQLASPELQQALHIQRLSEQTAFKRLKALTYMRRQIRNPLCGIVFSRKMLEGTELGTEQKQLLQTSVQCQRQLSKVLDDSDLDKIIDGYLDLEMVEFSMHDVLIASLSQVMTKSSAKGIRLVNDVAEHIMTETLYGDSLRLQQVLADFLLISITFTPSGGKVVVAASLTKDQLGQSVHLANLELSITHAGSGIPEALLNQMFGSDGQESEEGISLLISRKLLKLMNGDVRYLREAGKSSFILSVELAAAHKSRA 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3545 1178 Gene3D - 1011 1176 IPR036890 -
Glsi02g3545 1178 SMART HisKA_10 948 1012 IPR003661 GO:0000155|GO:0007165
Glsi02g3545 1178 SUPERFAMILY GAF domain-like 463 641 - -
Glsi02g3545 1178 ProSiteProfiles Histidine kinase domain profile. 955 1174 IPR005467 -
Glsi02g3545 1178 CDD HATPase_Phy-like 1059 1170 IPR044767 -
Glsi02g3545 1178 FunFam Phytochrome 667 798 - -
Glsi02g3545 1178 ProSiteProfiles PAS repeat profile. 804 856 IPR000014 -
Glsi02g3545 1178 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 272 445 IPR016132 -
Glsi02g3545 1178 SUPERFAMILY GAF domain-like 252 452 - -
Glsi02g3545 1178 SUPERFAMILY PYP-like sensor domain (PAS domain) 128 240 IPR035965 -
Glsi02g3545 1178 Gene3D - 460 633 IPR043150 -
Glsi02g3545 1178 Pfam PAS fold 804 926 IPR013767 GO:0006355
Glsi02g3545 1178 Pfam PAS fold 674 788 IPR013767 GO:0006355
Glsi02g3545 1178 Gene3D PAS domain 665 802 - -
Glsi02g3545 1178 MobiDBLite consensus disorder prediction 1 23 - -
Glsi02g3545 1178 Gene3D PAS domain 818 929 - -
Glsi02g3545 1178 MobiDBLite consensus disorder prediction 52 73 - -
Glsi02g3545 1178 NCBIfam PAS domain S-box protein 678 794 IPR000014 -
Glsi02g3545 1178 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1060 1170 IPR003594 -
Glsi02g3545 1178 Gene3D - 253 616 IPR029016 -
Glsi02g3545 1178 CDD PAS 682 788 IPR000014 -
Glsi02g3545 1178 Gene3D PAS domain 128 375 - -
Glsi02g3545 1178 ProSiteProfiles PAS repeat profile. 671 741 IPR000014 -
Glsi02g3545 1178 SMART HKATPase_4 1060 1172 IPR003594 -
Glsi02g3545 1178 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1005 1163 IPR036890 -
Glsi02g3545 1178 PANTHER TWO-COMPONENT HISTIDINE KINASE 939 1158 - -
Glsi02g3545 1178 PIRSF Phytochrome_conventional 53 1178 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Glsi02g3545 1178 SMART gaf_1 272 465 IPR003018 GO:0005515
Glsi02g3545 1178 Coils Coil 452 472 - -
Glsi02g3545 1178 ProSiteProfiles PAC domain profile. 744 800 IPR000700 -
Glsi02g3545 1178 Pfam GAF domain 272 455 IPR003018 GO:0005515
Glsi02g3545 1178 Pfam PAS fold 123 239 IPR013654 GO:0006355
Glsi02g3545 1178 FunFam Phytochrome 460 591 - -
Glsi02g3545 1178 Pfam Phytochrome region 468 643 IPR013515 GO:0006355|GO:0009584
Glsi02g3545 1178 SUPERFAMILY PYP-like sensor domain (PAS domain) 677 784 IPR035965 -
Glsi02g3545 1178 PRINTS Phytochrome signature 603 621 IPR001294 GO:0006355|GO:0009584
Glsi02g3545 1178 PRINTS Phytochrome signature 693 708 IPR001294 GO:0006355|GO:0009584
Glsi02g3545 1178 PRINTS Phytochrome signature 485 505 IPR001294 GO:0006355|GO:0009584
Glsi02g3545 1178 PRINTS Phytochrome signature 766 783 IPR001294 GO:0006355|GO:0009584
Glsi02g3545 1178 PRINTS Phytochrome signature 372 393 IPR001294 GO:0006355|GO:0009584
Glsi02g3545 1178 PRINTS Phytochrome signature 570 589 IPR001294 GO:0006355|GO:0009584
Glsi02g3545 1178 PRINTS Phytochrome signature 287 306 IPR001294 GO:0006355|GO:0009584
Glsi02g3545 1178 PRINTS Phytochrome signature 786 806 IPR001294 GO:0006355|GO:0009584
Glsi02g3545 1178 PRINTS Phytochrome signature 187 209 IPR001294 GO:0006355|GO:0009584
Glsi02g3545 1178 PRINTS Phytochrome signature 674 690 IPR001294 GO:0006355|GO:0009584
Glsi02g3545 1178 SMART pas_2 673 739 IPR000014 -
Glsi02g3545 1178 SMART pas_2 803 872 IPR000014 -
Glsi02g3545 1178 SUPERFAMILY PYP-like sensor domain (PAS domain) 818 924 IPR035965 -
Glsi02g3545 1178 CDD PAS 815 926 IPR000014 -
Glsi02g3545 1178 ProSitePatterns Phytochrome chromophore attachment site signature. 372 381 IPR013516 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3545 Glsi-ChrGlsi02 82423253 82429511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3545 55 1175 Histidine Kinase Gene Family AT1G09570 80.481 0.0 1909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3545 02 82423253 82429511 Glsi11g0340 11 2195506 2197119 CCT
Glsi02g3545 02 82423253 82429511 Glsi02g3545 02 82423253 82429511 ECH