Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi233g00003 ATGGGGGTTCATAAATCGGACACCGTGGTCTACCTTCACGGGAACCTCGATTTGAGAATCGTTGAGGCTAGATATCTACCAAACATGGACATGCTTTCAGAGCGCGTTCGTAGATTCTTCTCCGCTCTCAACACCTGCAGCGCTTCCATCACCGGTAAAAAGAAGGATCAACATCACCGTCACCATCCCGCCAAGATTATCACCAGCGATCCTTACGTCACCGTTTGCCTCGCCGGTGCCACGGTGGCACGCACCCGCGTCATCTCCAACTCGCAGAATCCCACCTGGAGCGAGCATTTCAAGATCCCTCTGGCTCACCCGGTCTCGAAGGTTGAGTTCTACGTCAAGGACAACGACATGTTCGGTGCGGACATGATCGGAATCGCCACAGTTTCCGCCGAGAGGATCAAATCCGGTGAAACTATCAGTGATTGGTTTCCGATAATAGGTTCGTTTGGGAAACCTCCCAAACCTGATTGCGCTGTGCGCCTCGAGATGAAATTCACGAGTTGCGAGGATAGTCCTCTGTACCGCTCCGGCATTGCGCCGGGTCCGGATCGTTTCGTCGTGAAGGATTCCTATTTTCCTGTGCGGCGCGGAGGATCAGTGACGCTGTATCAGGATGCGCACGTTCCTGATTCGATGTTACCGGAGGTTGAATTGGACGATGGGGTTGTGTTTCAGCAAGGCAAGTGCTGGGAAGATATCTGTCACGCAATTTTGGAAGCGCATCATTTGGTTTACATTGTAGGTTGGTCCATCTACCATAAGGTGAATCTGGTCAGAGAGCCAACCAAGCCCTTACCTAGTGGTGGGAATTTGAATTTGGGGGAGTTGCTCAAGTACAAGTCACAAGAAGGCTTGCGAGTTTTACTGTTGGTTTGGGATGATAAGACTTCGCACAGTAAATTTTTCATCAACACGGCTGGAATAATGCAAACACATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTACATGTGTGTTGTCACCTCGTTATGCCAGCAGTAAGCTTAGCATTTTCAAGCAACAGGTTGTTGGAACTCTCTTCACGCATCATCAGAAATGTGTGATTGTGGATACTCAAGCACATGGCAATAATCGGAAGATAACTGCATTTTTAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCTGAGCATAGACTTTTCCGTGATCTTGACACTGTTTATCAGGGTGATTATCATAATCCCACATTTTCTGCAGGAAGCAAGGGTCCAAGGCAACCATGGCATGATTTACATTGCAAAATTGAGGGCCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCCACCAAATGGTCTGAGTTGGGTCAAAAATTCAAGAGAGTATCTCATTGGCATGAGGATTCTTTGATTAAGTTAGATCGCATCTCTTGGATTCTTAGTCCTTCTGAATCAACTTCTAATGATGATCCTGAATTATGGGTTTCAAAGGAAGATGATCCTGAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGCTCTTTGAAAGGCTTTCCCAAGGATTTATTTGAAGCTGAGGCTCTGAACCTTGTTTGTGCAAAAAATTTGGTCATAGACAAGAGTATTCAAACAGCATACATACATGCGATCAGATCTGCTCAACATTTTATATATATTGAGAATCAATATTTCCTTGGATCATCCTTTGCTTGGCCATCTTACAAAGAAGCAGGTGCTGATAACTTAATTCCTATGGAGTTGGCACTGAAGATAGTCAGTAAGATAAGATCCAAGGAGAGATTTGCAGTTTATATTGTCATCCCAATGTGGCCTGAAGGGGTCCCTTCTTCTGCCGCAGTGCAAGAGATTCTCTTTTGGCAGGGACAAACTATGCAAATGATGTATGAAATCATAGCTCGGGAGTTAAAATCTATGCACCTTGACGATTGCCATCCACAAGATTACCTCAATTTTTACTGTCTTGGAAACCGAGAGAAGTTGACAACTTCCGGTTTACGTTCAAGTAATTCAACTTCAGATAATGGCGAGACGCAGGTTTCAGCATCACAAAAGTTCGGACGGTTTATGGTTTATGTACATGCCAAGGGAATGGTTGTGGACGATGAATATGTGATAATTGGGTCTGCCAACATCAATCAACGATCTATGGCTGGATCAAGAGATACTGAGATCGCAATGGGTGCATATCAACCCCATCATACATGGAGTAAGAAAAGGGAACATCCACATGGTCAGGTATATGGGTATAGAATGTCTCTGTGGGCAGAACACTTAGGGTTCACAGATGCTTGCTTCAAGGAGCCTGAAAGTTTGGATTGCGTGAAGAAAGTGACCAAGATTGCTGAAGACAACTGGAAGAAGTTTACAGCAGATGATTTTGCCCCATTGCAAGGGCACCTTATGAAATATCCTGTCCATGTTGATGAAAATGGAAAGGTACGCTCCTTACCTGGATTTGAGTCTTTCCCAGATGTCGGTGGTAAGGTGCTTGGCTCCCGGTCTACCCTTCCTGATGCTCTAACTACATAG 2553 0.4501 MGVHKSDTVVYLHGNLDLRIVEARYLPNMDMLSERVRRFFSALNTCSASITGKKKDQHHRHHPAKIITSDPYVTVCLAGATVARTRVISNSQNPTWSEHFKIPLAHPVSKVEFYVKDNDMFGADMIGIATVSAERIKSGETISDWFPIIGSFGKPPKPDCAVRLEMKFTSCEDSPLYRSGIAPGPDRFVVKDSYFPVRRGGSVTLYQDAHVPDSMLPEVELDDGVVFQQGKCWEDICHAILEAHHLVYIVGWSIYHKVNLVREPTKPLPSGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTAGIMQTHDEETRKFFKHSSVTCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFLGGLDLCDGRYDTPEHRLFRDLDTVYQGDYHNPTFSAGSKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATKWSELGQKFKRVSHWHEDSLIKLDRISWILSPSESTSNDDPELWVSKEDDPENWHVQVFRSIDSGSLKGFPKDLFEAEALNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIVSKIRSKERFAVYIVIPMWPEGVPSSAAVQEILFWQGQTMQMMYEIIARELKSMHLDDCHPQDYLNFYCLGNREKLTTSGLRSSNSTSDNGETQVSASQKFGRFMVYVHAKGMVVDDEYVIIGSANINQRSMAGSRDTEIAMGAYQPHHTWSKKREHPHGQVYGYRMSLWAEHLGFTDACFKEPESLDCVKKVTKIAEDNWKKFTADDFAPLQGHLMKYPVHVDENGKVRSLPGFESFPDVGGKVLGSRSTLPDALTT 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi233g00003 850 PANTHER PHOSPHOLIPASE D 5 841 IPR015679 -
Gabi233g00003 850 FunFam Phospholipase D delta 223 466 - -
Gabi233g00003 850 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 169 IPR035892 -
Gabi233g00003 850 Pfam C2 domain 14 148 IPR000008 -
Gabi233g00003 850 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 696 723 IPR001736 GO:0003824
Gabi233g00003 850 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 351 386 IPR001736 GO:0003824
Gabi233g00003 850 ProSiteProfiles C2 domain profile. 1 146 IPR000008 -
Gabi233g00003 850 Pfam Phospholipase D Active site motif 352 386 IPR001736 GO:0003824
Gabi233g00003 850 Pfam Phospholipase D C terminal 770 840 IPR024632 -
Gabi233g00003 850 SMART C2_3c 15 145 IPR000008 -
Gabi233g00003 850 SUPERFAMILY Phospholipase D/nuclease 193 458 - -
Gabi233g00003 850 SMART pld_4 696 723 IPR001736 GO:0003824
Gabi233g00003 850 SMART pld_4 351 386 IPR001736 GO:0003824
Gabi233g00003 850 SUPERFAMILY Phospholipase D/nuclease 543 781 - -
Gabi233g00003 850 Pfam PLD-like domain 548 732 IPR025202 -
Gabi233g00003 850 Gene3D Endonuclease Chain A 226 470 - -
Gabi233g00003 850 Gene3D Endonuclease Chain A 526 748 - -
Gabi233g00003 850 Gene3D C2 domain 12 176 IPR035892 -
Gabi233g00003 850 CDD C2_plant_PLD 9 169 - -
Gabi233g00003 850 PIRSF PLD_plant 1 850 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi233g00003 Gabi-Chr233 44020 49849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi233g00003 9 849 Phospholipase D Gene Family (Wang group) AT2G42010 53.979 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi233g00003 K01115 - gmx:100795859 1549.64