Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1470g00006 ATGTATCACCCAAAGAAGTTCTCGCCGGGAACCATGGTGCCACATAAATCTCAAGGTGGTGCTGAACAACTTGCAAATGTTGGGATTTTGAGTGGATCTGCAGTGAAAAATGCCGCTCCTGCTGGTGGAATTGGGAAACATCGTTTACGATGGACAAGCGATCTTCATGACCGTTTTGTGGATGCAATCACACAACTTGGTGGACCAGATAGAGCAACACCGAAAGGTGTTCTGAGAGTGATGGGTGTACCTGGACTGACCATTTATCACGTTAAAAGCCATTTACAGAAGTATCGCCTTGCAAAGTACTTGCCTGAATCATCAGCTGATGACTCTAAAGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCGCAGATTCTTCCCCGGGATTGCAAATCAGTGACGCTTTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAACAGCTTGAGGTTCAAAAGCAGTTACAAATGAGGATTGAAGCACAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGACAACCTCGGAAACACTTCCATTGTCCCATGATAAGCAAAATCATCCCCAGTTAGAGCCTTCTGGATCTAGTGATACCCTTGCAGGCACTTTGCCTCCACTTAAAAAACAGAGAATCGATGATGGTTCAAAGGATACCTTCACTGCTTCACAAGTGCCAAGAAAGACCGCACAGAATAATGACTCTAATGTTGGTCAGTTGGATCCAAACTTGAATGAAGATGATGCTGAGTTTGGATTTGATTTGGAGAAAGAAAGGGTTGAAGATAAGGAGAGTGAGCAGTAA 834 0.4376 MYHPKKFSPGTMVPHKSQGGAEQLANVGILSGSAVKNAAPAGGIGKHRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESSADDSKDEKRNSGDSISGADSSPGLQISDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSETLPLSHDKQNHPQLEPSGSSDTLAGTLPPLKKQRIDDGSKDTFTASQVPRKTAQNNDSNVGQLDPNLNEDDAEFGFDLEKERVEDKESEQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1470g00006 277 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 46 225 IPR044848 GO:0003700
Gabi1470g00006 277 Gene3D - 45 104 - -
Gabi1470g00006 277 FunFam Myb family transcription factor 45 103 - -
Gabi1470g00006 277 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Gabi1470g00006 277 Pfam MYB-CC type transfactor, LHEQLE motif 132 178 IPR025756 -
Gabi1470g00006 277 MobiDBLite consensus disorder prediction 106 132 - -
Gabi1470g00006 277 MobiDBLite consensus disorder prediction 227 252 - -
Gabi1470g00006 277 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Gabi1470g00006 277 MobiDBLite consensus disorder prediction 189 277 - -
Gabi1470g00006 277 MobiDBLite consensus disorder prediction 189 213 - -
Gabi1470g00006 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Gabi1470g00006 277 MobiDBLite consensus disorder prediction 106 121 - -
Gabi1470g00006 277 MobiDBLite consensus disorder prediction 260 277 - -
Gabi1470g00006 277 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1470g00006 Gabi-Chr1470 17175 21164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1470g00006 46 178 G2-like Transcription Factor Family AT4G13640 56.463 9.64e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi1470g00006 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1470g00006 - - tpra:123889278 437.573