Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01927 ATGTCAGATGTCCGTGTTGATCCAAGTGAGCTGAAGAAGGAACTTACTGCTCTTCGAAAGGCTGCGCGATTTTTGCGTGACCCTGAAACTAGTTCTTCCTGGAGGTCACCTTTGAGTTCTAGATCAGTAGCTGGAGCTTCTAGTTTGAACTATGGAATTGGAACCAAAGGAAACTCCACTGGAGCAAATCACACTGGTGGGTATTCTGAGCTTGAGTCTCATTTGCCCTTGAGAAGCAAAACCAATCGGAAAAAGGTGTTCCTCTATAATTGGAGGCATCAATCTAGCAAATCAAGTGACAGCGGGGCAAAATTGGATGGGGACGCATATGGGAAAGAAGGATCAGTACTGGGGAGTCCTGAGGATAGCTTAACTGATATCCAAAAGATAGATTCTAAGAGTGACACATATCTCCAGGATCCTATAATGCTCTTCAGAGTCAGAGAGGCAAACTTAGAGACTCCCGTCAGAAGAACAGTTAAGCAGTTAAAGAAAAGCTCTGCTGCTTCAAGACAACGTGTTGTCAGAAGCTCTGCAAATTCAAAAAATTTGGATCTTCCGTCCATTTCCGTAGGAGGAGAGCAATCTGACGACACAGAATACTGCAACTCTGAGGATTTACGGATTTTGACAAATAACTTTACTCGAAAAAATGGGTACACTTCGAGGTCAACATCACCATTGCCTCCCAGATGTGAAAATTGGCCCCGCTCATCCAAACTCTTGAGAAGTACCCGAAGAGAGGACTCATCTTATTCTTATACCCCCGCATCAACCAGTTCGTATAATAGATATGGAAACCGGAACCCCAGTACTGTTGGGTCTTGGGATGGCACTACTGCTTCCTTTGATGGGGATGAAGTAGATCATTTGGATCTGCCAAGGAACCAAGGATGTGGGATTCCTTGCTATTGGTCAAAGAGGACACCAAAGCATAGGGGCTGTGGAGGTTGTTACTCTCCTTCACTTTCTGATACTCTGAGGAAAAAAGGAAGTAGCATCCTATGTGGAAGCCACACATTGTATCATAGACGTCGATCATCAGGATCCAACAAGCGCAAACTTGTCTCAAAATCTTCCCAAGGTCTGCCATTGCTGACTAACAGTAGTGATGGTAGAGGAGGGTCATCTAGGGACAGTGGACAAAGTGATGACGAGCTTTCAACTAACTTTGGGGAGCTCGACTTGGAGGCTTTGAGCAGGTTGGATGGAAGGAGATGGTCGTCAAGTTGCAGAAGCCAAGAAGGTTTAGAGATAGTAGCTCTAAAAAAAGGAGTCGAGGAAGGGTCACCAGACCATATTAGGAGCTTGAGCCAGAAGTATAGGCCAAGGTTCTTTGATGAACTCATTGGGCAGAATATTGTGGTTCAATCACTAATTAATGCCATTTCAAGGGGAAGGGTTGCTCCTGTTTATCTTTTCCAAGGCCCCCGTGGGACGGGAAAAACATCCACAGCAAGAATATTCACTGCAGCTTTGAATTGCCTGGCTCCCAAAGAAACTCAGCCGTGTGGATTCTGCAAGGAATGCACCGATTTTATCTCTGGTAAGAGGATGGATCTGAGAGAAGTGGATGCTGCCAATAAGAAAGGAGTAGATAGAGTGAGGTACCTGTTGAAAAGCCTGTCCACGGCCCCCAAGTCGTTTTTTTCACATTACAAGGTCTTTATTATTGATGAATGCCACTTGTTACCCTCCAAAACCTGGTCTTCTTTTATGAAGTTTTTTGAGGAACCACTGCCACGTGTCGTCTTCATATTCATAACAACTGATCTTGACAACCTGCCCCGCACTGTACTATCCCGGTGTCAGAGATACATCTTCAACAAGATCAAAGATGCTGATATTGTAAAAAGGTTGAAGAAGCTTTCTGCTGACGAGAACCTGGATGTTGAATCAGATGCTTTGGACCTGATCGCTTTGAATGCAGATGGTTCGCTTCGGGATGCAGAAACTATGTTAGACCAGTTGAGTTTGCTGGGAAAAAGAATCACTGCATCACTTGTAAATGAATTTGTTGGGGTTGTTTCAGATGAGAAATTACTTGATCTCTTAGAGTTAGCCATGTCATCAGACACTGCAGAAACAGTGAAGAGAGCCAGAGAGTTGATGGATTCTGGGGTTGATCCAATGGCATTGATGTCTCAATTAGCAGGCCTTATTATGGATATCATTGCTGGAACTTACCACTTGGTCGATTCGAAATGCAGCAGTTCATTCTTTGGTGGGCGAAGTTTGACTGAAGCAGAGTTGGAGAGACTAAAGCAGGCTTTGAAACTTCTTTCAGAAGCAGAAAGGCAGCTAAGGGTTTCGAGTGAGCGCTCAACATGGTTCACAGCAGCTCTTCTACAACTCGGTTCCGTCTCTTCTCCAGATCCTACTCATTCAAGCAGCAGTAGGAAGAAGAGCTCCAAGACAACAGGGGAAAATCCAAGGGGGGATTCTAGAGAAGTTTCTGTCCATAAGAAGAAGCCTGATGTGCATGTGCTGCGGAAATCAACTTCTTCTGCTTCGATGCCCAAAGCAGTTGATCGACATTCCAACTCTTGGGGTGATTCATTGTCAATGGTTGATACTATTAATTTCGATGCCAGGTCCACATGCAGCCGACCTGTGGAGGGCGGTGCATCAGCTGCTACTCACAAAAATATGGCTGGGAGTAGCGTATGCATAAGCCCGGAGAAGTTGGATGATATCTGGGAGAAGTGTATTGATAGATGCCACTCGAAGACATTGAGGCAGTTGCTGCGTGTGCATGGAAAGCTTGTATCGATCTCTGAAGTCGAAGGTGGTCTGATTGCTTCCATAGCATTTGATGACGGGGAAATCAAATCCAGAGTTGAGAGGTTTCTGAGTAGTATCACTAATTCAATCGAAATTGTTCTGAGACACAATGTGGAGGTTAAAATTGGATTAATGCCAGATGGGGAGTCTTCTATAAATGGAGTAAAGCTGGTCGAGTTGCCCGACTCTTCTGTTCGGAGGGAGATGGAAACAACTGAGATGATGCAGAGGGAACGAAAAGGGGATTCTAATAACTCAATAAATGGTCATTCAGATCTGAATTTGCACCAGGAACCTCTCAAAGTACCCAGAGAAAGTTTTAATCGTTCCGAAGGTAAGCTACAAGGAGGATCACCAGAGCAATCTGATTGCTCTTCACCAGTGCCGGATGGGTGCTACCAAGCTACTACTGAGTTACCAGTCCTTTTGGCGGAAGGGAATGCTGGAAGCTATGGCACAAATGAGAGGAAGCAGGAGATACCAATGCAAAGAATACAAGCCATTATCGACGAGCAGAGGTTAGAGAGTGCATGGTTACAAGCTGCAGAGAAGGGAACCCCTGGATCTTTGAGTAGGTTAAAACCAGAGAGGAATCAAGTCTTGCCACAAGATGAAATTGATCGTCAGAATCAGATGGCATCCTTAATGTCGATGGGGTTATCCTCCCAGCGTTGGGAGGATGAACTGAATCATGGAATTAAAGCTTTGAAGATCAACGATGGCAGGGGCCACCAGAAGGAACAGAGTGGTAAAAGGGTTGAGCACTATCCCATGTCTCCAAGCTTATTGCATGATAGCAGCTTTACAGGCAATTTCAACAAAGAGAACCTGGGATTTGAGCCAGGGTCAGGCCCTGTTGGTTGCAACGGACTCCTTTGTTGGAAAACGGCCAAACCTTACAACAAAGGGAAGGTTAAGCAAGGAACCCCCATTCGATCATATAGGAGCAGACACTTTTTATGGTTTGGACAGTGTGGGAAGGCAAAGAAGACACAGAATAGATTCAAAAGATGA 3798 0.4502 MSDVRVDPSELKKELTALRKAARFLRDPETSSSWRSPLSSRSVAGASSLNYGIGTKGNSTGANHTGGYSELESHLPLRSKTNRKKVFLYNWRHQSSKSSDSGAKLDGDAYGKEGSVLGSPEDSLTDIQKIDSKSDTYLQDPIMLFRVREANLETPVRRTVKQLKKSSAASRQRVVRSSANSKNLDLPSISVGGEQSDDTEYCNSEDLRILTNNFTRKNGYTSRSTSPLPPRCENWPRSSKLLRSTRREDSSYSYTPASTSSYNRYGNRNPSTVGSWDGTTASFDGDEVDHLDLPRNQGCGIPCYWSKRTPKHRGCGGCYSPSLSDTLRKKGSSILCGSHTLYHRRRSSGSNKRKLVSKSSQGLPLLTNSSDGRGGSSRDSGQSDDELSTNFGELDLEALSRLDGRRWSSSCRSQEGLEIVALKKGVEEGSPDHIRSLSQKYRPRFFDELIGQNIVVQSLINAISRGRVAPVYLFQGPRGTGKTSTARIFTAALNCLAPKETQPCGFCKECTDFISGKRMDLREVDAANKKGVDRVRYLLKSLSTAPKSFFSHYKVFIIDECHLLPSKTWSSFMKFFEEPLPRVVFIFITTDLDNLPRTVLSRCQRYIFNKIKDADIVKRLKKLSADENLDVESDALDLIALNADGSLRDAETMLDQLSLLGKRITASLVNEFVGVVSDEKLLDLLELAMSSDTAETVKRARELMDSGVDPMALMSQLAGLIMDIIAGTYHLVDSKCSSSFFGGRSLTEAELERLKQALKLLSEAERQLRVSSERSTWFTAALLQLGSVSSPDPTHSSSSRKKSSKTTGENPRGDSREVSVHKKKPDVHVLRKSTSSASMPKAVDRHSNSWGDSLSMVDTINFDARSTCSRPVEGGASAATHKNMAGSSVCISPEKLDDIWEKCIDRCHSKTLRQLLRVHGKLVSISEVEGGLIASIAFDDGEIKSRVERFLSSITNSIEIVLRHNVEVKIGLMPDGESSINGVKLVELPDSSVRREMETTEMMQRERKGDSNNSINGHSDLNLHQEPLKVPRESFNRSEGKLQGGSPEQSDCSSPVPDGCYQATTELPVLLAEGNAGSYGTNERKQEIPMQRIQAIIDEQRLESAWLQAAEKGTPGSLSRLKPERNQVLPQDEIDRQNQMASLMSMGLSSQRWEDELNHGIKALKINDGRGHQKEQSGKRVEHYPMSPSLLHDSSFTGNFNKENLGFEPGSGPVGCNGLLCWKTAKPYNKGKVKQGTPIRSYRSRHFLWFGQCGKAKKTQNRFKR* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01927 1265 Gene3D - 612 674 - -
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 831 846 - -
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 248 278 - -
Eupl13g01927 1265 Pfam DNA polymerase III subunits gamma and tau domain III 664 726 IPR022754 GO:0003887
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 805 824 - -
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 345 387 - -
Eupl13g01927 1265 Gene3D - 429 609 IPR027417 -
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 998 1059 - -
Eupl13g01927 1265 FunFam DNA polymerase III subunit gamma/tau 432 610 - -
Eupl13g01927 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 657 IPR027417 -
Eupl13g01927 1265 FunFam DNA polymerase III subunit gamma/tau 612 674 - -
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 998 1013 - -
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 1039 1059 - -
Eupl13g01927 1265 Gene3D - 675 789 - -
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 788 846 - -
Eupl13g01927 1265 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 437 869 - -
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 218 278 - -
Eupl13g01927 1265 NCBIfam DNA polymerase III subunit gamma/tau 435 785 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Eupl13g01927 1265 CDD HLD_clamp_pol_III_gamma_tau 611 674 IPR045085 -
Eupl13g01927 1265 SUPERFAMILY post-AAA+ oligomerization domain-like 681 783 IPR008921 GO:0003677|GO:0006260
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 218 232 - -
Eupl13g01927 1265 Coils Coil 744 774 - -
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 353 387 - -
Eupl13g01927 1265 CDD AAA 450 608 - -
Eupl13g01927 1265 MobiDBLite consensus disorder prediction 788 804 - -
Eupl13g01927 1265 Pfam DNA polymerase III, delta subunit 451 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01927 Eupl-Chr13 39938781 39983162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01927 439 726 Core DNA Replication Machinery Family AT1G21690 24.242 1.13e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01927 - - nnu:104593900 1728.76