Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00944 ATGGATTTTTCTTCGTGTATAGCGAAGAGAACTCGGTCTCGAGAAGCCCTATTTTACAGAACCGAATTCGGGAGAAGAAAGAACAGTAATGGAGGAGGTACGGTGGGGTTGAGTGAATGCAGTGGTAGGAAGAGTGAAGACTCTAATGGAGATGAAGATAGGGTTAGGGGTTCTACGAAATTAGGGTTTAAGAAGAGAAAAGGAACTAAAGATGCATCTAAGGATCCTGATTCTGTAGTTTCAGTCGATGGTAGTAAGGAGGACGAAGTAGTAGAAGTAATAGATGGAGAGGAAGCTTTTGATTCTCTCAGTTCAGACGGTTCTGATTTGAAGTGGAGACGAAGATCAAAATCAGGGTTCGAGAAAGGTAGGAATGTAGTTTGCAGCGACGATGATGGAGAGGGTGAGAAAGAGGGAGGTTTTGATTCGCTTAGTTCGGAGGGTTTTGATTTAAAGAGGAGAAGTGTATCAAAATCTTGGCTTGAGAAAGATAAGAATGTAGTTTCAATTGATGTCGATGAGAGTGAGTCGTCTGGTCAAGAAACGGATGAAGAAGACTTTAAATTGAATAATGAGGCGAATTTTTGCATTGCGAGAAGAACTCGTTCGAAGCTGGGATTTCAGAAAGAGTTCCAAACTGTTAATAGTAGTGTTTACATTGATTATGATGAGTCAAAATCTGAATCTTCTAGTAGTCACGACGATACAGATAAATCACGCTGTTCTACTAGTGTAGAGGAGTGTACTTCTTACAATGGAGATGGAAATGGGGAAGATTCTGATGATACTAAAGCTGTGAAGAGAAAAAGTTTCAATGGGGACGAGAAGGACAAAAGTGCTGAGACAAAATTAAAGAGAAAAATATTTTCTGGACTGAAAATTCTGGTTTCTTCAAAAGGGGATAAGGATAGTAGGTGCGCTGCACAACGAACCCGATCCCATTTTGGGTCAGGATCCTCCGAGAAGAAGCTCGGAACTGTTAGTCGCCCATTTTGTTTAGACTCTTCATCTGCGAGTGATAGGGATGCTGATGCTGCCGCTGCTGCTGTGGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGATGATGATATTCACAGTGATGATGAGGACAATGCAGATGAAAACAGCAGTAACCATGATAATGACAATGGTGATGATGGTGTTGAAAAGGAAGTAGGTGGAAAGGAGGAAGGGGAGTTGAGCAAGCCCACAAAGAGAAAGCGTGTTCGTGCGCCAAAAGGCGATTCCCTTTTCAAGCTTTTCGTAAATACCATATGGGAGAAGGGTGAAGTGCTTCAGCAAGACTTTATTCTTTCGGACAATGAGGCTGTTGAACAAGAAAAAACTCCACCGGTGGCTGAAACCTCTCTTCCGTTGAAGTTCTCTTTTGGTGTCAAAGAATCTAGGCCAGAAGAGAAATCAGATTACGAGAAAGAATTGGATCAGTTATGGGCTGAGTTCGATTTTGTTCTCAAATCTAGTGAGATTGGTTCCGTTGGTTCTTTTGCGGTCGACACTGAAGATGCCAATGAACCAGAGGTTGAGACAGATCCATCTACCCTTTGTGGTCAAGGGAAGCATCAACTTATCCTTGATGAGCAAATTGGAATCAGATGCAGGTTTTGCTCTTTTGTGAAGCTGGAGATTAAGTATATATTTCCACCTATGACCAGCGCATCCCGTCAGGAAAGATCCAGCAAGAAAACTTCAGTCAGTGAAGCAAACTTTTCCATGTTTGATGGATTGCACTTTCAGGACACCGATGGCGATTCCAAGGGTTCCTATGTTCATACTGAAGGTACAGTGTGGGACAAAATCCCTGGCATCAGAAAGAGAATGTATGCACACCAGAAAGAAGGTTTTGAGTTTTTGTGGAAAAACATAGCAGGAAGCATCGACCTGGATAAGATGAAGAAATCTGCCAGTTCTGATGGCTTAGGCGGGTGTGTGATTTCCCATGCTCCTGGAACAGGGAAGACCTTCCTAACCCTAGTCTTTCTCCAAACGTACATGGACGTATTCCCAGAATGCAGACCGGTCATCATTGCTCCTTGCAGCATGCTCCTTACATGGGAAGAAGAATTCAAAAAATGGAAGGTTGAAATCCCATTTCACAATCTGAATAATCCAGATTTCTCTGGAAATGAAGATAGGTTAGCCCGTGAATTAGTACAGGATAGAACCCGAAGTAAGAAGTGGAACCGTATGGTGAAGCTGGTTTCCTGGAGCAAGGAAAAGAGCATCCTAGGTGTTAGCTATCCTTTGTTTGAGAAGCTAGCTGGAGAAAGATCTGTGAAGGATAAAGAAGGTAAGAGACCAAGGATCCTACCGGATAAAGAAGGTGAGGAAATAAAGAAGATCCTACTTGAGAAACCCAGTTTGTTAGTCCTCGATGAAGGACACACTCCTCGAAATGACCGCAGTCTCATCTGGAAGGTTCTGAAGAATATAAAAACGGAAAGGCGCATCATTCTATCAGGAACCCCTTTCCAGAATAATTTTGACGAGCTCTACAATACACTGTGGTTGGTGAGACCAAAATTTGCAGACGGGATCTCAATCAAAAGCCAAAAGATCTGCCAAGGAAGAATGAGAGTGCCAGAAATGAAAGAAGCAAGAGAGAAATGGGCTTCTCTAACCAGCTCTATTCGCAAAAGTGCTGACGATAGGTTAGAGGAGCTCAGAGCTACGATTGATCCTTTCGTACATGTTCATAGAGGTAGCGTACTTAATGAAAACCTTCCTGGATTAAGGGACTGTGTGGTTGTTTTACATCCACCCCCTTTGCAGAAACACCTTCTTGAGGGAATTCAAGGAATACAGAACCCTCTTAAACTAGAACATACACTGTCTTTGACATCTGTCCACCCGTCCCTGTTGACAAGGTGCTGTTTGTCTGGAGAGGAAAAGTCCATCGTTGATGAGATTGCGTTAAATAGACTCAGATTAAACCCTAATGAGGGAGTGAAAACAAGATTTCTTATGGAACTTATCCGGCTTAGTGAAGCAGTGAATGAGAAAGTTTTGGTATTCAGTCAATTTATTGATCCGCTTTTTCTTATTAAGGACCTACTTCAATCCCTTTTCAATTGGACGGAAGGGAAGGAGATATTGCAGATGGATGGAAAACTTAACGTAAAGCATCGGCAAACCTCGATCAATCTTTTCAATGATCCAGCTAGCAAAGTGAGGGTGTTACTTGCATCAATAAAGGCTTGTCGTGAGGGGATAAATCTTATTGGGGCTTCAAGAGTTGTTCTGCTAGATGTTGTTTGGAATCCAGCGGTAGAAAGGCAAGCTATAAGCCGAGCATATAGACTTGGACAGAAAAAAGTTGTGTACACTTACCATCTCATTACATCCGGAACAATGGAGGGCGAGAAGTACTGTAGACAGGTGGAGAAGCACCACTTATCTAAGTTGGTGTTTTCTTCTACGCACAGGCACTGCGATAAGCAGAATGACTCAATGAAGGTATCAGAAGATAAAATCTTAGAAGTGATGGTTGGACATGACAAGCTCAAAGATATGTTTGAAAAGATTATATACCAACCAAAAGAGTCAAATTTGGTTAAGACTTTTGGATCGGTGGCTCTCAAACAAACACCCAATGGAAATTCTGTTGGTTAG 3633 0.4255 MDFSSCIAKRTRSREALFYRTEFGRRKNSNGGGTVGLSECSGRKSEDSNGDEDRVRGSTKLGFKKRKGTKDASKDPDSVVSVDGSKEDEVVEVIDGEEAFDSLSSDGSDLKWRRRSKSGFEKGRNVVCSDDDGEGEKEGGFDSLSSEGFDLKRRSVSKSWLEKDKNVVSIDVDESESSGQETDEEDFKLNNEANFCIARRTRSKLGFQKEFQTVNSSVYIDYDESKSESSSSHDDTDKSRCSTSVEECTSYNGDGNGEDSDDTKAVKRKSFNGDEKDKSAETKLKRKIFSGLKILVSSKGDKDSRCAAQRTRSHFGSGSSEKKLGTVSRPFCLDSSSASDRDADAAAAAVAAAAAAAAAAADDDIHSDDEDNADENSSNHDNDNGDDGVEKEVGGKEEGELSKPTKRKRVRAPKGDSLFKLFVNTIWEKGEVLQQDFILSDNEAVEQEKTPPVAETSLPLKFSFGVKESRPEEKSDYEKELDQLWAEFDFVLKSSEIGSVGSFAVDTEDANEPEVETDPSTLCGQGKHQLILDEQIGIRCRFCSFVKLEIKYIFPPMTSASRQERSSKKTSVSEANFSMFDGLHFQDTDGDSKGSYVHTEGTVWDKIPGIRKRMYAHQKEGFEFLWKNIAGSIDLDKMKKSASSDGLGGCVISHAPGTGKTFLTLVFLQTYMDVFPECRPVIIAPCSMLLTWEEEFKKWKVEIPFHNLNNPDFSGNEDRLARELVQDRTRSKKWNRMVKLVSWSKEKSILGVSYPLFEKLAGERSVKDKEGKRPRILPDKEGEEIKKILLEKPSLLVLDEGHTPRNDRSLIWKVLKNIKTERRIILSGTPFQNNFDELYNTLWLVRPKFADGISIKSQKICQGRMRVPEMKEAREKWASLTSSIRKSADDRLEELRATIDPFVHVHRGSVLNENLPGLRDCVVVLHPPPLQKHLLEGIQGIQNPLKLEHTLSLTSVHPSLLTRCCLSGEEKSIVDEIALNRLRLNPNEGVKTRFLMELIRLSEAVNEKVLVFSQFIDPLFLIKDLLQSLFNWTEGKEILQMDGKLNVKHRQTSINLFNDPASKVRVLLASIKACREGINLIGASRVVLLDVVWNPAVERQAISRAYRLGQKKVVYTYHLITSGTMEGEKYCRQVEKHHLSKLVFSSTHRHCDKQNDSMKVSEDKILEVMVGHDKLKDMFEKIIYQPKESNLVKTFGSVALKQTPNGNSVG* 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00944 1210 Pfam Helicase conserved C-terminal domain 993 1109 IPR001650 -
Eupl08g00944 1210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 867 IPR027417 -
Eupl08g00944 1210 MobiDBLite consensus disorder prediction 299 409 - -
Eupl08g00944 1210 MobiDBLite consensus disorder prediction 226 242 - -
Eupl08g00944 1210 MobiDBLite consensus disorder prediction 377 409 - -
Eupl08g00944 1210 CDD SF2_C_SNF 991 1120 - -
Eupl08g00944 1210 SMART ultradead3 610 856 IPR014001 -
Eupl08g00944 1210 MobiDBLite consensus disorder prediction 310 335 - -
Eupl08g00944 1210 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 997 1166 IPR001650 -
Eupl08g00944 1210 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 641 848 IPR014001 -
Eupl08g00944 1210 Gene3D - 594 903 IPR038718 -
Eupl08g00944 1210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 791 1147 IPR027417 -
Eupl08g00944 1210 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 80 1190 IPR044567 GO:0080188
Eupl08g00944 1210 MobiDBLite consensus disorder prediction 119 147 - -
Eupl08g00944 1210 Gene3D - 916 1190 IPR027417 -
Eupl08g00944 1210 MobiDBLite consensus disorder prediction 21 88 - -
Eupl08g00944 1210 SMART helicmild6 1020 1109 IPR001650 -
Eupl08g00944 1210 MobiDBLite consensus disorder prediction 44 88 - -
Eupl08g00944 1210 Pfam SNF2-related domain 645 935 IPR000330 GO:0005524|GO:0140658
Eupl08g00944 1210 MobiDBLite consensus disorder prediction 167 186 - -
Eupl08g00944 1210 MobiDBLite consensus disorder prediction 257 282 - -
Eupl08g00944 1210 MobiDBLite consensus disorder prediction 222 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00944 Eupl-Chr8 26569651 26579706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00944 995 1144 RAD5 or RAD16-like Gene Family AT5G05130 40.523 2.46e-19 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl08g00944 SNF2_N 4.6e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00944 K10875 - nnu:104609843 1117.45