Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01297 ATGACAACCACCAACAGCAGCAGCGGCGGCGGCGGCGGCAGCAGAGCATTTGCTCAGTACAATACAGATGCAAGGCTCCTTGCTGAGTTTGAGCAATATTATGATTTAGGTAAGTTATTTGACTATTCAAACTCTGTTAAATTTGCACCAGAATCAGCTCCTGAAGAACAGATAACTGCATATCTCTCTAAAATCCAAAGGGGTGGTCTCATCCAGCCCTTTGGTTGCATGCTTTCCATTGAAGAACCCAGCTTCAGAATCATAGCTTACAGTGAAAACTCCATTAATTTACTGGGTCTTGACACTCTTCTAAAATCCAAAGATTTCAAATGTCTGCTTGGGTTTGACGCCCGAACCTTCTTCACCCCTTCGTCTGCAGCCTCACTGTCAAAAGCTGCAGGCTCCAGTGACATTTCGCTGTTCAACCCGATTTGGGTACATTCGAGAAGTACCCAGAAACCGTTTTATGCCATACTCCACAGAATTGATGTGGGAATTGTGATAGATTTGGAGCCCGCAAGGTCGGATGACCCTGCGTTTTCTGTTGCTGGTGCGGTACAGCCACAGAAACTTGCTGTCGCAGCAATTTCCCGGCTGCACTCACTCCCTGGGGGAGATATTGGTATCTTGTGTGACACCATTGTGGAAGAAGTTCAGGAGCTTACTGGGTATGACAGGGTAATGGTTTATAAGTTCCATGAGGATGAGCATGGTGAGGTTGTGTCGGAGATCAGGAGGTCAGATTTGGAGCCTTATTTGGGTTTACATTATCCGGCAACGGATATTCCGCAGGCTGCTCGTTTCCTGTTCAAGCAGAACCGTGTCAGGTTGATCCATGATTGTAATGCGATTCCTGTTGGTATCATTCAGAGCGCAGAGTTGAAGCAGCCTCTGTGCTTAGTCAATTCAACCCTTCGAGCACCCCATGGTTGCCACTCGCAGTATATGGCCAACATGGGATCCCTTGCTTCATTAGTGATAGCAATTGTTGTCAAGGAGAATGACTCAATGAGGCTCTGGGGGTTGGTCGCCTGCCACCATGGTTCGCCCCGTTACATTACGTTTCCCCTTCGCTATGCTTGTGAGTTCCTCATGCAGGCTTTTGGGCTGCAGTTGAACATAAAGCTTCAATTAAAGTTGCAATTGGAAGAAAAAAAGATTCTTAAGATGCAGATCTTGTTGTCTGACATGCTTTTCAGGGACATCCCATTCGGGATTGTGACTGAGTCTCCAAATATCATGGACCTCATGAAGTGTGACGGGGCTGCATTATATTATGGTGGGGTATGTAGGTTGTTGGGTGTAACACCGACTGAAGCACAGATAAAGGATATCACAGACTGGCTGCTTACGCATCACGGGGACTCAACGGGGTTGACTACAGATAGTTTAGCCACTTCCGGTTATCCAGGTGCAGCTTCGCTTGGCAATGCAATCTGCGGTATGGCTGCTGCAAGGATTACATCAAAGGATTTTGTGTTCTGGTTTAGGTCTCACACTACAAAGGAAGTCAAATGGGGAGGAGCTAAGTATCTTCCTGATGATAAAGATGATGATGGAAGAATGCACCCCAGGTCATCATTTAAGGCTTTCCTTGAAGTGGTAAAAAATAGGAGTTTGCCTTGGGAGGTTTCAGAGATGAATGCTATTCACTGGCTACAGCTTATCATGCGAGGTTCATTTCGGTATATTGAGGATAGTGGTGCTAAGAGGATCATCAGTGCCCAACAGAATGATTTGGAGACACAGGGGATGGATGAACTCAGTTCAGTGGCCTGCGAGATGGTCAGACTGATTGAGACAGCATCGGCCCCAATTTTTGCTGTTGATTCAGCTGGGATCATCAATGGATGGAATGCTAAAACTGCTGAATTGACGGGTCTACCAGCTAGTGAAGCTATGGGGAAATCCCTGGCTGATGAGCTTATCCACGAGGAATCCCGTGCAGTTGTTGAAAATCATCTATCCCGAGCTTTGCAAGGTGAGGAGGATAAAAATATTGAGTTAAGGTTGAGGACTTTTGGGTCGCAACAGAAAGATGGGGCTGTATTTATTGTGGCCAATGCCTGCTCAAGTAAGGATACCACAAACAGTGTCGCCGGAGTGTGCTTTTTGGGTCAAGATGTCACTAAAGAGAGAGTGATAATGGATAAATTCATCCGCTTGCAAGGGGATTACAAGACTATCATACACAGTCTTAATCCATTGATCCCACCAATATTTGCTTCAGATGAGAATGCATGCTGCTCTGAGTGGAACACAGCAATGGAAAAGCTAACTGGTTGGACGAGGGGGGAGGTCATTTGGAAAATGCTTCTCGGGGAAATCTTTGGGGGTTTCTGTCCGCTGAAAGGTCAAGATGCGCTGAATAAATTTATGACTCTCCTGTACAATGCGCTTAGTGGCCAGGATACCGAGAAGGTCCCATTTGCTTTTTTAGATAGGAAAGGGAAACACGTGGAGGTCCTCTTAACAGCAAATAAGAGGAAGGATATGGATGGGCATATAATTGGGTGTCTCTGCTTCCTGCAGACTTTAGTGCCCAACCCGCAGCATACCTTAGAAGTGCAAAGGCAACAGGAGAGAAAGTACTTTGCAAGACTTAAGGAGTTGGTGTACATTCAACAAGAGATGAAAAGTCCTTTGAAAGGAATACAGTTCGCCCACAAAATGCTACAGAGTACTGCTGTTTCAGATGATCAGAAACAATTTCTTGAGACTAGTCATGCATGTGAAAGGCAGATGACGACTATCATAGAGGATACACATTTAGGAAGTATAGAGGAGGGTTGTATGGAGCTAAACATGGTGGACTTTCCCTTGGGAAGTGTCATGGATGCCATTGTTAGTCAAGTAACGATTTTGTTGAGGGAAAGGAATTTACAGCTAATTCATGAGATTCCGGTGGAAGTCAAAACACTCTCTCTATATGGTGATCAAATTAGACTTCAGCAAGTCTTGTCAGATTTCTTGCTGAATATAGTGCATCATGCACCATCTCCGGATGGTTGGGTAGAAATCAAGGTTGCATCCAGTTTAAAGCGGATACATGATGAGATTGAGCTTGCGCAGTTACAGTTCAGAATGACTCACCCTGGCCAGGGACTCCCTACAGAACTTGTCCAAGACATGTTTGAGGAAGGAACTGGGTGGGCTTCAGTGGAAGGCCTTGGGCTAAGCCTGTCCAGGAAGCTTCTCAAGATGATTAATGGTCATGTCAATTATGTCAGGGAGCCTAGCAAGTGCCACTTCCTCATTGACATTGAATTTCAAACTACTCAAAAGAGATGCAAGGAATCAGAAGCAGATGTGAGCAGGCTCACCTAA 3327 0.4554 MTTTNSSSGGGGGSRAFAQYNTDARLLAEFEQYYDLGKLFDYSNSVKFAPESAPEEQITAYLSKIQRGGLIQPFGCMLSIEEPSFRIIAYSENSINLLGLDTLLKSKDFKCLLGFDARTFFTPSSAASLSKAAGSSDISLFNPIWVHSRSTQKPFYAILHRIDVGIVIDLEPARSDDPAFSVAGAVQPQKLAVAAISRLHSLPGGDIGILCDTIVEEVQELTGYDRVMVYKFHEDEHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRLIHDCNAIPVGIIQSAELKQPLCLVNSTLRAPHGCHSQYMANMGSLASLVIAIVVKENDSMRLWGLVACHHGSPRYITFPLRYACEFLMQAFGLQLNIKLQLKLQLEEKKILKMQILLSDMLFRDIPFGIVTESPNIMDLMKCDGAALYYGGVCRLLGVTPTEAQIKDITDWLLTHHGDSTGLTTDSLATSGYPGAASLGNAICGMAAARITSKDFVFWFRSHTTKEVKWGGAKYLPDDKDDDGRMHPRSSFKAFLEVVKNRSLPWEVSEMNAIHWLQLIMRGSFRYIEDSGAKRIISAQQNDLETQGMDELSSVACEMVRLIETASAPIFAVDSAGIINGWNAKTAELTGLPASEAMGKSLADELIHEESRAVVENHLSRALQGEEDKNIELRLRTFGSQQKDGAVFIVANACSSKDTTNSVAGVCFLGQDVTKERVIMDKFIRLQGDYKTIIHSLNPLIPPIFASDENACCSEWNTAMEKLTGWTRGEVIWKMLLGEIFGGFCPLKGQDALNKFMTLLYNALSGQDTEKVPFAFLDRKGKHVEVLLTANKRKDMDGHIIGCLCFLQTLVPNPQHTLEVQRQQERKYFARLKELVYIQQEMKSPLKGIQFAHKMLQSTAVSDDQKQFLETSHACERQMTTIIEDTHLGSIEEGCMELNMVDFPLGSVMDAIVSQVTILLRERNLQLIHEIPVEVKTLSLYGDQIRLQQVLSDFLLNIVHHAPSPDGWVEIKVASSLKRIHDEIELAQLQFRMTHPGQGLPTELVQDMFEEGTGWASVEGLGLSLSRKLLKMINGHVNYVREPSKCHFLIDIEFQTTQKRCKESEADVSRLT* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01297 1108 SMART pas_2 593 660 IPR000014 -
Eupl06g01297 1108 SMART pas_2 727 794 IPR000014 -
Eupl06g01297 1108 PANTHER OS08G0260000 PROTEIN 56 928 - -
Eupl06g01297 1108 Gene3D PAS domain 738 846 - -
Eupl06g01297 1108 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 933 1081 IPR036890 -
Eupl06g01297 1108 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 206 366 IPR016132 -
Eupl06g01297 1108 CDD PAS 736 844 IPR000014 -
Eupl06g01297 1108 Gene3D - 908 1085 IPR036890 -
Eupl06g01297 1108 NCBIfam PAS domain S-box protein 598 712 IPR000014 -
Eupl06g01297 1108 PIRSF Phytochrome_conventional 1 1100 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Eupl06g01297 1108 Pfam His Kinase A (phospho-acceptor) domain 873 930 IPR003661 GO:0000155|GO:0007165
Eupl06g01297 1108 SMART HKATPase_4 978 1092 IPR003594 -
Eupl06g01297 1108 Gene3D PAS domain 64 309 - -
Eupl06g01297 1108 Gene3D - 381 553 IPR043150 -
Eupl06g01297 1108 SMART gaf_1 206 386 IPR003018 GO:0005515
Eupl06g01297 1108 CDD HisKA 866 921 IPR003661 GO:0000155|GO:0007165
Eupl06g01297 1108 ProSiteProfiles PAS repeat profile. 725 777 IPR000014 -
Eupl06g01297 1108 Pfam PAS fold 725 844 IPR013767 GO:0006355
Eupl06g01297 1108 Pfam PAS fold 594 709 IPR013767 GO:0006355
Eupl06g01297 1108 CDD HATPase_Phy-like 977 1090 IPR044767 -
Eupl06g01297 1108 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 978 1081 IPR003594 -
Eupl06g01297 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 597 681 IPR035965 -
Eupl06g01297 1108 FunFam Phytochrome 587 719 - -
Eupl06g01297 1108 Gene3D PAS domain 592 713 - -
Eupl06g01297 1108 SUPERFAMILY GAF domain-like 384 560 - -
Eupl06g01297 1108 ProSiteProfiles Histidine kinase domain profile. 873 1094 IPR005467 -
Eupl06g01297 1108 SMART HisKA_10 866 930 IPR003661 GO:0000155|GO:0007165
Eupl06g01297 1108 FunFam Phytochrome 738 846 - -
Eupl06g01297 1108 ProSitePatterns Phytochrome chromophore attachment site signature. 306 315 IPR013516 -
Eupl06g01297 1108 Pfam Phytochrome region 394 560 IPR013515 GO:0006355|GO:0009584
Eupl06g01297 1108 Pfam GAF domain 208 375 IPR003018 GO:0005515
Eupl06g01297 1108 Gene3D - 187 537 IPR029016 -
Eupl06g01297 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 739 841 IPR035965 -
Eupl06g01297 1108 ProSiteProfiles PAS repeat profile. 591 662 IPR000014 -
Eupl06g01297 1108 PRINTS Phytochrome signature 594 610 IPR001294 GO:0006355|GO:0009584
Eupl06g01297 1108 PRINTS Phytochrome signature 707 727 IPR001294 GO:0006355|GO:0009584
Eupl06g01297 1108 PRINTS Phytochrome signature 613 628 IPR001294 GO:0006355|GO:0009584
Eupl06g01297 1108 PRINTS Phytochrome signature 687 704 IPR001294 GO:0006355|GO:0009584
Eupl06g01297 1108 PRINTS Phytochrome signature 524 542 IPR001294 GO:0006355|GO:0009584
Eupl06g01297 1108 PRINTS Phytochrome signature 121 143 IPR001294 GO:0006355|GO:0009584
Eupl06g01297 1108 PRINTS Phytochrome signature 221 240 IPR001294 GO:0006355|GO:0009584
Eupl06g01297 1108 PRINTS Phytochrome signature 406 426 IPR001294 GO:0006355|GO:0009584
Eupl06g01297 1108 PRINTS Phytochrome signature 491 510 IPR001294 GO:0006355|GO:0009584
Eupl06g01297 1108 PRINTS Phytochrome signature 306 327 IPR001294 GO:0006355|GO:0009584
Eupl06g01297 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 65 175 IPR035965 -
Eupl06g01297 1108 FunFam Phytochrome 381 510 - -
Eupl06g01297 1108 SUPERFAMILY GAF domain-like 186 373 - -
Eupl06g01297 1108 CDD PAS 602 687 IPR000014 -
Eupl06g01297 1108 Pfam PAS fold 60 173 IPR013654 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01297 Eupl-Chr6 22085047 22092756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01297 18 1092 Histidine Kinase Gene Family AT4G18130 61.694 0.0 1390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01297 K12123 K12121 msin:131240792 1618.59