Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00880 ATGGATCCTCCTTCTATGATCAGCGAAGTTTCGTTTCCCTCTGCGAACGCGTCGTCGTATAGCCTGGCTGAGATTTGGCCATTTCCACTCACTGGAGGTGAATCTGGTGGTGTTTTGGGTGCGAGGACAGGTCATCTTGGAGTGGATTTGAGTGGATTTGGGGATACGGTGACGGGGAATCGAGATGTTTCAGGTGCTGAGTCGACAGTTACCGAGCAGAGTGGGAGAAATGGCGGTGGAGGTGGGAGGAAACGGAGAGATGCGGTGACTTTGGAGGATGAGTCATCGAAGCTGGTCTCTAGTAGTAATGGCAATGACATGAATGATAGCAAGGATAAACGTCTGAAAGTGTCGGGATCCAGAGATGAAAATGGTGATTCGAAAGCTGAGGTGGAAGCAAGTTCGGGCGTTGGTAACATGCCAGCCGATCAAAGCACTCAACCCTCCGAGCCACCTAAGCAAGACTACATCCATGTGCGAGCGAGAAGGGGTCAAGCTACTGATAGCCACAGCCTAGCAGAGAGAGCCAGGAGAGAAAAGATCAGCGAGAGGATGAAGATTCTCCAAGATCTGGTCCCTGGATGTAATAAGGTGATTGGTAAAGCACTGGTCCTTGATGAGATAATTAATTACATCCAATCACTACAGCATCAGGTTGAGTTTCTGTCGATGAAGCTTGAAGCAGTTAATTCGAGAATGGACCCCAGCATTGACGGATTTCCTTCAAAAGATTTTGGTGCACAGACATTTGATACTGCTGGTATGGCATTTGGCTCACAAGCAACAAGGGAATATGGCCAGGGGTCACCACCAGAATGGCTGCATATGCAGGTTGGTGGCGGTTTTGACAGACCAACATAA 861 0.489 MDPPSMISEVSFPSANASSYSLAEIWPFPLTGGESGGVLGARTGHLGVDLSGFGDTVTGNRDVSGAESTVTEQSGRNGGGGGRKRRDAVTLEDESSKLVSSSNGNDMNDSKDKRLKVSGSRDENGDSKAEVEASSGVGNMPADQSTQPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRMDPSIDGFPSKDFGAQTFDTAGMAFGSQATREYGQGSPPEWLHMQVGGGFDRPT* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00880 286 Gene3D - 162 236 IPR036638 GO:0046983
Eupl04g00880 286 MobiDBLite consensus disorder prediction 138 152 - -
Eupl04g00880 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983
Eupl04g00880 286 MobiDBLite consensus disorder prediction 57 76 - -
Eupl04g00880 286 FunFam Basic helix-loop-helix transcription factor 162 234 - -
Eupl04g00880 286 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 77 256 IPR024097 GO:0006355
Eupl04g00880 286 MobiDBLite consensus disorder prediction 107 129 - -
Eupl04g00880 286 MobiDBLite consensus disorder prediction 32 153 - -
Eupl04g00880 286 SMART finulus 171 221 IPR011598 GO:0046983
Eupl04g00880 286 Coils Coil 212 232 - -
Eupl04g00880 286 MobiDBLite consensus disorder prediction 79 93 - -
Eupl04g00880 286 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Eupl04g00880 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 234 IPR036638 GO:0046983
Eupl04g00880 286 CDD bHLH_AtBPE_like 155 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00880 Eupl-Chr4 13548992 13557174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00880 1 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 53.425 2.24e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl04g00880 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00880 - - nnu:104608024 426.017